New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395434 =	166 (1.080)	54 (0.350)	8/130	24.1	0.24	intergenic (+246/‑685)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1396604	179 (0.750)					coding (486/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CGCCAAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..........................................................................................................................  <  NC_014034/1395480‑1395434 ..................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTTGGCGCGGGCGGCTGGCCAGTCCCACGAAAGCAGTTTCGATCCACGCCCCCGCG  <  NC_014034/1396604‑1396518                                                |||||||||||||||||||||||||||||||||||                                                                                        tttttgatcaGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCG                                                                      <  2:77542/91‑1 (MQ=0)  atttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGC                                                                     <  1:962880/91‑1 (MQ=0)  atttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGC                                                                     >  1:591389/11‑101 (MQ=0)  atttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGC                                                                     >  1:2976767/11‑101 (MQ=0)  atttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGC                                                                     >  1:1372698/11‑101 (MQ=0)   tttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCG                                                                    >  1:4333768/10‑101 (MQ=0)   tttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCG                                                                    <  1:4095430/92‑1 (MQ=0)    ttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGG                                                                   >  1:558822/9‑101 (MQ=0)    ttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGG                                                                   >  1:3283737/9‑101 (MQ=0)     tgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGG                                                                  >  2:4324849/8‑101 (MQ=0)     tgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGG                                                                  >  1:3424577/8‑101 (MQ=0)     tgatcatCGATGTTTCGAGCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGG                                                                  <  2:521830/94‑1 (MQ=0)      gatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                                                                 >  1:2553121/7‑101 (MQ=0)      gatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                                                                 <  1:1722554/95‑1 (MQ=0)      gatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                                                                 >  1:2628110/7‑101 (MQ=0)      gatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                                                                 <  1:2610532/95‑1 (MQ=0)      gatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                                                                 >  2:2188897/7‑101 (MQ=0)       atcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGG                                                                >  1:989310/6‑101 (MQ=1)        tcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                               <  1:4088146/97‑1 (MQ=1)         catctATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                              <  2:1847543/96‑1 (MQ=1)         catCGATGTTTCGATCCACGCCCCCGCGGTGGGAGCGACGCGGTATCGGTGTGCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                              <  1:3831201/98‑1 (MQ=0)         catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                              >  2:529006/4‑100 (MQ=1)         catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                              >  1:1947330/4‑100 (MQ=1)         catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                              <  2:3078909/98‑1 (MQ=1)         catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                              <  1:410738/98‑1 (MQ=1)         catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                              <  2:1088950/98‑1 (MQ=1)         catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGGGTTTCGATCCACGCCCCCGCGGGGGGg                                                              >  1:2765150/4‑100 (MQ=0)          atCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                             <  1:202806/99‑1 (MQ=1)          atCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                             <  2:279151/99‑1 (MQ=1)           tCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                            <  2:2015063/100‑1 (MQ=1)            CGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                           >  1:2927772/1‑101 (MQ=1)            CGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                           >  1:1673210/1‑101 (MQ=1)            CGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                           >  2:4330274/1‑101 (MQ=1)            CGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                           >  2:1231429/1‑101 (MQ=1)            CGATGTGTCGATCCCCGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                           <  2:2297310/101‑1 (MQ=0)             GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                          >  1:3926598/1‑101 (MQ=1)              ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGCGCGAC                                                         >  1:4581766/1‑101 (MQ=1)              ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                         >  1:3312653/1‑101 (MQ=1)               TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg                                                        >  2:2771772/1‑100 (MQ=1)                GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgc                                                       >  2:1202685/1‑99 (MQ=1)                GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGAGGTCTTTCGATCCACGCCCCCGCGGGGGGAGCGACgc                                                       >  1:3991238/1‑99 (MQ=0)                 TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgca                                                      <  2:3025890/101‑4 (MQ=1)                 TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgca                                                      >  2:2065067/1‑98 (MQ=1)                 TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgca                                                      <  2:2043302/101‑4 (MQ=1)                  TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcag                                                     >  2:1510206/1‑97 (MQ=1)                  TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcag                                                     <  1:4180787/101‑5 (MQ=1)                  TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcag                                                     >  1:4388192/1‑97 (MQ=1)                  TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcag                                                     >  1:4626361/1‑97 (MQ=1)                   TCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcagc                                                    <  2:573027/101‑6 (MQ=1)                    CGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcagcg                                                   >  1:1588754/1‑95 (MQ=1)                     GATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcagcgg                                                  >  1:362189/1‑94 (MQ=1)                     GATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcagcgg                                                  >  1:2866016/1‑94 (MQ=1)                       TCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcagcggca                                                <  1:901269/101‑10 (MQ=1)                        CCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcagcggcac                                               >  2:370638/1‑91 (MQ=1)                                                                     GACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTTGGCGCGGGCGGCTGGCCAGTCCCACGAAAGCAGTTTCGATCCACGCCCCCGCG  <  1:4476132/101‑1 (MQ=1)                                                |||||||||||||||||||||||||||||||||||                                                                                        CGCCAAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..........................................................................................................................  <  NC_014034/1395480‑1395434 ..................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTTGGCGCGGGCGGCTGGCCAGTCCCACGAAAGCAGTTTCGATCCACGCCCCCGCG  <  NC_014034/1396604‑1396518 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG