BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395466	192 (1.220)	43 (0.270)	13/132	20.5	0.20	intergenic (+278/‑653)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
*	?	NC_014034	1395832 =	144 (0.610)	43 (0.270)	13/132	20.5	0.20	intergenic (+644/‑287)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
Rejected: Position hash score below cutoff.


ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA................................................................................  >  NC_014034/1395427‑1395466


..........................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGCCGCCTATCG  >  NC_014034/1395832‑1395877


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ggacggaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC                     <  1:1076318/94‑1 (MQ=9)


ggacggaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC                     <  2:1608829/94‑1 (MQ=9)


ggacggaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC                     <  2:1229282/94‑1 (MQ=9)


 gacggaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG                    >  2:2041603/7‑101 (MQ=9)


 gacggaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG                    <  1:1459308/95‑1 (MQ=9)


  acggaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA                   >  1:1109907/6‑101 (MQ=9)


  acggaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA                   <  2:1786547/96‑1 (MQ=9)


  acggaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA                   <  1:3941613/96‑1 (MQ=9)


   cggaGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAA                  <  1:3533381/97‑1 (MQ=9)


    ggaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAA                 >  1:695362/4‑101 (MQ=14)


    ggaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAA                 <  1:1200123/98‑1 (MQ=14)


     gaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAAC                >  1:3051868/3‑101 (MQ=14)


      aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACT               <  2:4624417/100‑1 (MQ=1)


      aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACT               >  2:2575366/2‑101 (MQ=1)


      aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACT               <  1:1598662/100‑1 (MQ=1)


      aGTCGCTCCCCCCGCGCGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACT               >  1:4074567/2‑101 (MQ=0)


       GTCTCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTACAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTG              <  1:3939697/101‑1 (MQ=0)


        TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGt             <  1:2269203/101‑2 (MQ=1)


        TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGt             >  2:3812974/1‑100 (MQ=1)


        TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGt             <  1:689005/101‑2 (MQ=1)


        TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGg             >  2:4384094/1‑100 (MQ=1)


         CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtg            <  1:2967973/101‑3 (MQ=1)


         CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtg            >  1:4343960/1‑99 (MQ=1)


         CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtg            >  2:1958769/1‑99 (MQ=1)


         CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtg            >  1:1357736/1‑99 (MQ=1)


         CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtg            <  2:1658077/101‑3 (MQ=1)


         CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAAATGac            >  2:1449939/1‑99 (MQ=0)


          GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGC           >  2:89050/1‑101 (MQ=0)


          GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGC           >  1:881066/1‑101 (MQ=0)


          GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGC           >  2:1303562/1‑101 (MQ=0)


           CTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCC          <  2:1474832/101‑1 (MQ=0)


            TCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCG         <  2:46760/101‑1 (MQ=0)


            TCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCG         >  2:702149/1‑101 (MQ=0)


             CCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCGg        >  1:143305/1‑100 (MQ=0)


             CCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCGg        >  2:2362958/1‑100 (MQ=0)


              CCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCGgt       >  2:131455/1‑99 (MQ=0)


              CCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCGgt       >  1:3769752/1‑99 (MQ=0)


               CCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCGgtt      >  1:4627474/1‑98 (MQ=0)


               CCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCGgtt      <  1:4169630/101‑4 (MQ=0)


                CCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCGgttc     >  2:3534984/1‑97 (MQ=0)


                 CCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCGgttcc    >  2:2502551/1‑96 (MQ=0)


                 CCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGCCGgttcc    <  1:3393779/101‑6 (MQ=0)


                   GCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGTGCCGgttcccg  <  1:1984806/101‑8 (MQ=0)


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ATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA................................................................................  >  NC_014034/1395427‑1395466


..........................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGCCGCCTATCG  >  NC_014034/1395832‑1395877

Base quality scores:


ATCG

< 3 ≤


ATCG

< 20 ≤


ATCG

< 29 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG