New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395598	152 (0.980)	38 (0.250)	11/130	21.7	0.21	intergenic (+410/‑521)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1397903 =	139 (0.590)					intergenic (+207/+1691)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

GCCGGCCTGCTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1395555‑1395598 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTATGGGAGGC  >  NC_014034/1397903‑1397946                                             |||||||||||||||||||||||||||||||||||                                             tattgcgcGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGT                        <  2:2151753/93‑1 (MQ=255)    tgcgcGCTGGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGA                     <  1:4036470/96‑1 (MQ=255)    tgcgcGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGA                     <  1:468237/96‑1 (MQ=2)    tgcgcGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGA                     >  1:4388154/6‑101 (MQ=2)      cgcGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  2:3489250/98‑1 (MQ=2)      cgcGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  2:3705582/98‑1 (MQ=2)      cgcGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  1:4289853/98‑1 (MQ=2)      caaggctGTCGGTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  2:2911267/8‑101 (MQ=16)       gcGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  2:572672/99‑1 (MQ=11)       gcGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  >  2:4185670/3‑101 (MQ=11)       gcGCTGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:2837856/99‑1 (MQ=2)         GCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  2:2798113/1‑101 (MQ=11)          ctgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  2:3984654/4‑101 (MQ=1)           cgGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  2:639414/99‑1 (MQ=1)            gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc             <  1:1767462/100‑2 (MQ=1)            gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACc             >  1:2750144/2‑100 (MQ=1)            gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc             <  1:3981102/100‑2 (MQ=1)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACct            >  2:2458298/1‑99 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGNCGTGGATCGAAACctat          >  2:1960121/1‑97 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          >  2:4657152/1‑97 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACctat          >  2:3713949/1‑97 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGGGGCTCGAAACccat          >  2:3882/1‑97 (MQ=0)                GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgcatg         <  2:3949448/101‑6 (MQ=1)                 CTCCCCGCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGa       <  1:791134/101‑2 (MQ=0)                 CTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGa       >  2:733649/1‑100 (MQ=0)                 CTCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGa       >  1:319939/1‑100 (MQ=0)                  TCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGag      >  1:4630914/1‑99 (MQ=0)                  TCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGag      <  1:3776569/101‑3 (MQ=0)                  TCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGag      <  1:2952943/101‑3 (MQ=0)                  TCCCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCCGGGGCGTGGATCGAAAC.CTATGag      >  2:2199497/1‑99 (MQ=0)                    CCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGaggg    >  2:2665059/1‑97 (MQ=0)                    CCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGaggg    >  2:3774134/1‑97 (MQ=0)                    CCCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGaggg    <  1:285176/101‑5 (MQ=0)                     CCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggc   >  2:2253630/1‑96 (MQ=0)                     CCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggc   <  1:4498243/101‑6 (MQ=0)                     CCCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggc   >  1:3317327/1‑96 (MQ=0)                      CCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggct  <  2:2905188/101‑7 (MQ=0)                      CCCGCGGGGGCGTGGATCGAAACTTGATGACCAGATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CTATGagggct  >  2:1069617/1‑95 (MQ=0)                                             |||||||||||||||||||||||||||||||||||                                             GCCGGCCTGCTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1395555‑1395598 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTATGGGAGGC  >  NC_014034/1397903‑1397946 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG