New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1395631 =156 (0.980)37 (0.230) 6/134 26.5 0.21 intergenic (+443/‑488) RCAP_rcc01306/RCAP_rcc01307 Cas2 family CRISPR‑associated protein/hypothetical protein
?NC_014034 = 1396198 128 (0.540)coding (80/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

ACATGCAGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC.............................................................................  <  NC_014034/1395674‑1395631
.............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGTGGCGG  <  NC_014034/1396198‑1396155
                                            |||||||||||||||||||||||||||||||||                                            
gacgtggcggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGG                      <  1:421990/91‑1 (MQ=0)
 acgtggcggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGG                     <  2:938021/92‑1 (MQ=1)
  cgtggcggGTTTCGATCCACGCCCCCCCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGG                    <  1:3922382/93‑1 (MQ=0)
   gtggcggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGA                   <  2:1017286/94‑1 (MQ=1)
    tggcggtTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAG                  <  2:1186824/94‑1 (MQ=0)
    gggcggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAG                  <  2:363162/95‑1 (MQ=1)
     ggcggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  1:2911496/6‑101 (MQ=1)
     ggcggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:346236/6‑101 (MQ=1)
     ggcggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  2:2959887/96‑1 (MQ=1)
      gcggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGTAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCG                <  2:1081152/97‑1 (MQ=1)
      gcggGTTTCGATCCACGCCCCCGCGGCGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCG                <  1:3919459/97‑1 (MQ=1)
        gtgttggGATCCCCGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              <  2:3204231/94‑1 (MQ=0)
        ggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAACCCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              <  2:2471955/99‑1 (MQ=1)
        ggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              <  2:4608724/99‑1 (MQ=1)
        ggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGAGGGGAGCGAC              <  1:149586/99‑1 (MQ=1)
         gGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             <  2:472197/100‑1 (MQ=1)
         gGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             >  2:2302311/2‑101 (MQ=1)
         gGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             >  2:2549532/2‑101 (MQ=1)
          GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC            <  2:171963/101‑1 (MQ=1)
           TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCA           >  2:1034116/1‑101 (MQ=1)
           TTTCGATCCACCCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCA           <  2:1783993/101‑1 (MQ=1)
            TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAa          <  2:2149569/101‑2 (MQ=1)
             TCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAac         >  1:3430769/1‑99 (MQ=1)
             TCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAac         <  2:1265337/101‑3 (MQ=1)
              CGACCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAacc        <  2:439236/101‑4 (MQ=0)
               GATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccg       >  1:2026338/1‑97 (MQ=1)
                acCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgc      <  2:4362149/99‑6 (MQ=0)
                ATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgc      >  2:1135072/1‑96 (MQ=1)
                ATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgc      >  2:24096/1‑96 (MQ=1)
                ATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgc      >  2:1370454/1‑96 (MQ=1)
                ATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgc      >  2:685449/1‑96 (MQ=1)
                ATCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgc      >  2:826403/1‑96 (MQ=1)
                 TCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgcg     >  2:2701087/1‑95 (MQ=0)
                 TCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgcg     >  2:1040619/1‑95 (MQ=0)
                 TCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgcg     <  1:3768479/101‑7 (MQ=0)
                 TCCACGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgcg     <  2:4593709/101‑7 (MQ=0)
                    cCGCCCCCGCGGGGGGAGCGACGCCGCTGGAAAACCTGACACTGCCGCCATAGCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAaccgcgagc  <  2:3096203/100‑10 (MQ=0)
                                            |||||||||||||||||||||||||||||||||                                            
ACATGCAGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC.............................................................................  <  NC_014034/1395674‑1395631
.............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGTGGCGG  <  NC_014034/1396198‑1396155

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG