BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395631 =	156 (0.980)	64 (0.400)	14/134	20.1	0.31	intergenic (+443/‑488)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
*	?	NC_014034	= 1396198	128 (0.540)	64 (0.400)	14/134	20.1	0.31	coding (80/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.


ACTACATGCAGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC.................................................................................  <  NC_014034/1395677‑1395631


................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGTGGCGGCGCG  <  NC_014034/1396198‑1396151


                                               |||||||||||||||||||||||||||||||||


tttgatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCG                             >  1:4333768/11‑101 (MQ=0)


tttgatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCG                             <  1:4095430/91‑1 (MQ=0)


 ttgatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGG                            >  1:558822/10‑101 (MQ=0)


 ttgatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGG                            >  1:3283737/10‑101 (MQ=0)


  tgatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGG                           >  2:4324849/9‑101 (MQ=0)


  tgatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGG                           >  1:3424577/9‑101 (MQ=0)


  tgatcatcGATGTTTCGAGCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGG                           <  2:521830/93‑1 (MQ=0)


   gatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                          >  2:2188897/8‑101 (MQ=0)


   gatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                          <  1:1722554/94‑1 (MQ=0)


   gatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                          >  1:2553121/8‑101 (MQ=0)


   gatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                          <  1:2610532/94‑1 (MQ=0)


   gatcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGG                          >  1:2628110/8‑101 (MQ=0)


    atcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGG                         >  1:989310/7‑101 (MQ=1)


     tcatcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGG                        <  1:4088146/96‑1 (MQ=1)


      catctATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                       <  2:1847543/96‑1 (MQ=1)


      catcGATGTTTCGATCCACGCCCCCGCGGTGGGAGCGACGCGGTATCGGTGTGCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                       <  1:3831201/97‑1 (MQ=0)


      catcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                       >  1:1947330/5‑100 (MQ=1)


      catcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                       >  2:529006/5‑100 (MQ=1)


      catcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                       <  2:3078909/97‑1 (MQ=1)


      catcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                       <  2:1088950/97‑1 (MQ=1)


      catcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                       <  1:410738/97‑1 (MQ=1)


      catcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGGGTTTCGATCCACGCCCCCGCGGGGGGg                       >  1:2765150/5‑100 (MQ=0)


       atcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                      <  2:279151/98‑1 (MQ=1)


       atcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                      <  1:202806/98‑1 (MQ=1)


        tcGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC                     <  2:2015063/99‑1 (MQ=1)


         cGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                    >  1:1673210/2‑101 (MQ=1)


         cGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                    >  2:4330274/2‑101 (MQ=1)


         cGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                    >  1:2927772/2‑101 (MQ=1)


         cGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                    >  2:1231429/2‑101 (MQ=1)


         cGATGTGTCGATCCCCGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                    <  2:2297310/100‑1 (MQ=0)


          GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                   >  1:3926598/1‑101 (MQ=1)


           ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGCGCGAC                  >  1:4581766/1‑101 (MQ=1)


           ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                  >  1:3312653/1‑101 (MQ=1)


            TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                 >  2:2771772/1‑101 (MQ=1)


             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC                >  2:1202685/1‑101 (MQ=1)


             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGAGGTCTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC                >  1:3991238/1‑101 (MQ=0)


              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCA               <  2:2043302/101‑1 (MQ=1)


              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCA               >  2:2065067/1‑101 (MQ=1)


              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCA               <  2:3025890/101‑1 (MQ=1)


               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAG              >  2:1510206/1‑101 (MQ=1)


               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAG              >  1:4626361/1‑101 (MQ=1)


               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAG              >  1:4388192/1‑101 (MQ=1)


               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAG              <  1:4180787/101‑1 (MQ=1)


                TCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGC             <  2:573027/101‑1 (MQ=1)


                 CGATCCACGGCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCCCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCG            <  2:4619420/101‑1 (MQ=0)


                 CGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGTCGACAGGTTCGGGGTGTTTCGATCCAGGCCCCCGCGGGGGGAGCGACGCAACG            >  2:774801/1‑101 (MQ=0)


                 CGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCG            >  1:1588754/1‑101 (MQ=1)


                 CGATCCACGCCCCCGCGGGGGGAGCGACGCGGCATCGGTGTTCGCCGCCGACAGGTTCGGGGAGTTTCGATCCACGCCCCCGCGGGGGGCGCGACGCAGCG            >  2:3799314/1‑101 (MQ=0)


                  GATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGg           >  1:362189/1‑100 (MQ=1)


                  GATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGg           >  1:2866016/1‑100 (MQ=1)


                   gtcgctcCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgc          >  2:958090/8‑99 (MQ=0)


                    TCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgca         <  1:901269/101‑4 (MQ=1)


                     cccCGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcac        <  2:1878486/98‑5 (MQ=0)


                     CCAGGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcac        >  2:3952715/1‑97 (MQ=0)


                     CCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcac        >  2:370638/1‑97 (MQ=1)


                       cCGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcacca      <  2:2247085/100‑7 (MQ=0)


                       ACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcacca      >  2:874002/1‑95 (MQ=0)


                         GCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATGCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccaga    >  1:3937364/1‑93 (MQ=0)


                         GCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccaga    >  1:1872542/1‑93 (MQ=0)


                         GCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccaga    >  1:1185588/1‑93 (MQ=0)


                         GCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccaga    >  2:4665273/1‑93 (MQ=0)


                          CCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccagaa   >  2:3163444/1‑92 (MQ=0)


                           CCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccagaag  <  2:181612/101‑11 (MQ=0)


                           CCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGgcaccagaag  <  1:203179/101‑11 (MQ=0)


                                               |||||||||||||||||||||||||||||||||


ACTACATGCAGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC.................................................................................  <  NC_014034/1395677‑1395631


................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGTGGCGGCGCG  <  NC_014034/1396198‑1396151

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 23 ≤


ATCG

< 32 ≤


ATCG

< 39 ≤


ATCG