New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395666	163 (1.020)	40 (0.250)	2/134	30.9	0.19	intergenic (+478/‑453)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1395965 =	175 (0.740)					intergenic (+777/‑154)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
Rejected: Position hash score below cutoff.

GGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT..............................................................................  >  NC_014034/1395624‑1395666 ............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGCCCTCGATCC  >  NC_014034/1395965‑1396009                                            |||||||||||||||||||||||||||||||||                                              cgcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                      >  1:3768479/8‑101 (MQ=0) cgcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                      >  2:4593709/8‑101 (MQ=0) cgcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                      <  2:2701087/94‑1 (MQ=0) cgcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                      <  2:1040619/94‑1 (MQ=0)  gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGgt                     >  2:4362149/7‑99 (MQ=0)  gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  2:826403/95‑1 (MQ=1)  gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  2:685449/95‑1 (MQ=1)  gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  2:1370454/95‑1 (MQ=1)  gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  2:1135072/95‑1 (MQ=1)  gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  2:24096/95‑1 (MQ=1)   cggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATC                    <  1:2026338/96‑1 (MQ=1)    ggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGGTCG                   >  2:439236/5‑101 (MQ=0)     gttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                  <  1:3430769/98‑1 (MQ=1)     gttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                  >  2:1265337/4‑101 (MQ=1)      ttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 >  2:2149569/3‑101 (MQ=1)       tGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGGGTGGATCGAAA                >  2:1783993/2‑101 (MQ=1)       tGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                <  2:1034116/100‑1 (MQ=1)        GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               >  2:171963/1‑101 (MQ=1)         CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc              <  2:2549532/101‑2 (MQ=1)         CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc              <  2:2302311/101‑2 (MQ=1)         CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACc              >  2:472197/1‑100 (MQ=1)          GTCGCTCCCCTCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACcc             >  1:149586/1‑99 (MQ=1)          GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACcc             >  2:4608724/1‑99 (MQ=1)          GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGGGGATCccaacac             >  2:3204231/1‑94 (MQ=0)          GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGGTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACcc             >  2:2471955/1‑99 (MQ=1)            CGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCGCCGCGGGGGCGTGGATCGAAACCCGC           >  1:3919459/1‑101 (MQ=1)            CGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTACAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGC           >  2:1081152/1‑101 (MQ=1)             GCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCC          >  2:2959887/1‑101 (MQ=1)             GCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCC          <  2:346236/101‑1 (MQ=1)             GCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCC          <  1:2911496/101‑1 (MQ=1)              CTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCC         >  2:363162/1‑101 (MQ=1)              CTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAACCGCCa         >  2:1186824/1‑100 (MQ=0)               TCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCac        >  2:1017286/1‑99 (MQ=1)               TCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGGGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGGGTGGATCGAAACCCGCCac        >  2:3942793/1‑99 (MQ=0)                CCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGGGGGGGCGTGGATCGAAACCCGCCacg       >  1:3922382/1‑98 (MQ=0)                 CCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCacgt      >  2:938021/1‑97 (MQ=1)                  CCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCacgtc     >  1:421990/1‑96 (MQ=0)                   CCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCacgtct    <  2:51778/101‑7 (MQ=0)                   CCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCacgtct    >  2:355731/1‑95 (MQ=0)                     CGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCacctcttg  >  1:2515544/1‑93 (MQ=0)                                            |||||||||||||||||||||||||||||||||                                              GGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT..............................................................................  >  NC_014034/1395624‑1395666 ............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGCCCTCGATCC  >  NC_014034/1395965‑1396009 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 38 ≤  ATCG