New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | = 1395666 | 163 (1.020) | 45 (0.280) | 16/134 | 18.9 | 0.22 | intergenic (+478/‑453) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
? | NC_014034 | 1397836 = | 154 (0.650) | intergenic (+140/+1758) | RCAP_rcc01307/RCAP_rcc01309 | hypothetical protein/IS66 family transposase | |||||
Rejected: Position hash score below cutoff. |
GGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT................................................................................ > NC_014034/1395624‑1395666
............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCACCTCAGCCC > NC_014034/1397836‑1397882
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cgcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA > 2:4593709/8‑101 (MQ=0)
cgcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA < 2:2701087/94‑1 (MQ=0)
cgcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA > 1:3768479/8‑101 (MQ=0)
cgcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA < 2:1040619/94‑1 (MQ=0)
gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGgt > 2:4362149/7‑99 (MQ=0)
gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT < 2:24096/95‑1 (MQ=1)
gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT < 2:1370454/95‑1 (MQ=1)
gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT < 2:1135072/95‑1 (MQ=1)
gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT < 2:685449/95‑1 (MQ=1)
gcggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT < 2:826403/95‑1 (MQ=1)
cggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATC < 1:2026338/96‑1 (MQ=1)
ggttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGGTCG > 2:439236/5‑101 (MQ=0)
gttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA > 2:1265337/4‑101 (MQ=1)
gttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA < 1:3430769/98‑1 (MQ=1)
ttGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA > 2:2149569/3‑101 (MQ=1)
tGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGGGTGGATCGAAA > 2:1783993/2‑101 (MQ=1)
tGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA < 2:1034116/100‑1 (MQ=1)
GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC > 2:171963/1‑101 (MQ=1)
CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC < 2:2549532/101‑1 (MQ=1)
CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC < 2:2302311/101‑1 (MQ=1)
CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACC > 2:472197/1‑101 (MQ=1)
GTCGCTCCCCTCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCC > 1:149586/1‑101 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCC > 2:4608724/1‑101 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGGGGATCccaacac > 2:3204231/1‑94 (MQ=0)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGGTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCC > 2:2471955/1‑101 (MQ=1)
CGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCGCCGCGGGGGCGTGGATCGAAACCCGc > 1:3919459/1‑100 (MQ=1)
CGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTACAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGc > 2:1081152/1‑100 (MQ=1)
GCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGcc < 1:2911496/101‑3 (MQ=1)
GCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGcc > 2:2959887/1‑99 (MQ=1)
GCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGcc < 2:346236/101‑3 (MQ=1)
CTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGccc > 2:363162/1‑98 (MQ=1)
CTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAACCGCCA > 2:1186824/1‑101 (MQ=0)
TCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCAC > 2:1017286/1‑101 (MQ=1)
TCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGGGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGGGTGGATCGAAACCCGCCAC > 2:3942793/1‑101 (MQ=0)
CCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGGGGGGGCGTGGATCGAAACCCGCCACg > 1:3922382/1‑100 (MQ=0)
CCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACgt > 2:938021/1‑99 (MQ=1)
CCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTC > 1:421990/1‑101 (MQ=0)
CCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCt > 2:355731/1‑100 (MQ=0)
CCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCt < 2:51778/101‑2 (MQ=0)
CCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAACCGCCACGTCtt > 2:3162265/1‑99 (MQ=0)
CGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACCTCttg > 1:2515544/1‑98 (MQ=0)
GCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCttgg < 2:2212052/101‑5 (MQ=0)
GCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCttgg > 1:4053677/1‑97 (MQ=0)
CGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCttgga < 2:4500142/101‑6 (MQ=0)
CGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCttgga > 1:3716553/1‑96 (MQ=0)
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GGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT................................................................................ > NC_014034/1395624‑1395666
............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCACCTCAGCCC > NC_014034/1397836‑1397882
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 38 ≤
ATCG
|