New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395831 =	117 (0.740)	44 (0.280)	12/134	21.5	0.20	intergenic (+643/‑288)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1397532	229 (0.960)					coding (1414/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GATCCACGCCCCCGCGGGGGGAGCGACTGCGCGGCGCTCGACCGGATGCGATAGGCGGCGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG................................................................................  <  NC_014034/1395925‑1395831 ................................................................................................................................TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGTGGTGCAGGGC  <  NC_014034/1397532‑1397486                                                                                                |||||||||||||||||||||||||||||||||                                                GATCCACGCCCCCGCGGGGGGAGCGACTGCGCGGCGCTCGACCGGATGCGATAGGCGGCGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGAcg                                                                            >  1:2452823/1‑99 (MQ=18)                                                    agatctaCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGG                         >  1:2546810/8‑101 (MQ=0)                                                     gatctaCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGG                        >  1:2253792/7‑101 (MQ=0)                                                       tctaCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCTGCGGGGGG                      <  2:4522955/97‑1 (MQ=0)                                                       tctaCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGG                      <  1:3931295/97‑1 (MQ=0)                                                       tctaCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGG                      >  1:2719672/5‑101 (MQ=0)                                                        ctaCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGg                     >  1:103860/4‑100 (MQ=0)                                                        ctaCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGg                     >  1:3486143/4‑100 (MQ=0)                                                        ctaCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGA                     <  2:3662002/98‑1 (MQ=0)                                                         taCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAG                    >  2:1915654/3‑101 (MQ=1)                                                         taCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAG                    >  1:4246383/3‑101 (MQ=1)                                                         taCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAG                    >  1:3299739/3‑101 (MQ=1)                                                          aCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC                   >  2:579777/2‑101 (MQ=1)                                                          aCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  2:2296662/100‑1 (MQ=1)                                                          aCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  2:1833530/100‑1 (MQ=1)                                                          aCGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  1:4491855/100‑1 (MQ=1)                                                              cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC               <  1:394476/100‑1 (MQ=1)                                                              cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC               <  1:1834991/100‑1 (MQ=1)                                                               GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG              <  1:1380751/101‑1 (MQ=1)                                                               GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG              <  2:2026198/101‑1 (MQ=1)                                                               GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG              >  1:3897068/1‑101 (MQ=1)                                                               GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG              >  1:1883622/1‑101 (MQ=1)                                                               GTTTCGATCCACGCCCACGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG              >  1:4486819/1‑101 (MQ=1)                                                                TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             >  1:1034040/1‑101 (MQ=1)                                                                TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             >  2:3071136/1‑101 (MQ=1)                                                                TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             >  1:1806798/1‑101 (MQ=1)                                                                TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             >  1:264612/1‑101 (MQ=1)                                                                TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             <  1:3243559/101‑1 (MQ=1)                                                                TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             >  1:4353667/1‑101 (MQ=1)                                                                 TTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGc            >  1:1034456/1‑100 (MQ=1)                                                                  TCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGcg           <  2:3724353/101‑3 (MQ=1)                                                                   CGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGG          >  1:1881713/1‑101 (MQ=1)                                                                   CGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGG          >  2:2653565/1‑101 (MQ=1)                                                                     ATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGga        >  1:2154770/1‑99 (MQ=1)                                                                      TCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgat       <  2:240526/101‑4 (MQ=0)                                                                      TCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgat       <  1:1601526/101‑4 (MQ=0)                                                                      TCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGCGGGAGCGACCGGCGGgac       >  1:1603174/1‑98 (MQ=0)                                                                       CCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatc      <  1:2302473/101‑5 (MQ=0)                                                                        CACGCCCCCGCGGGGGGAGCGGCGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatcc     >  1:3438958/1‑96 (MQ=0)                                                                        CACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatcc     <  2:2988851/101‑6 (MQ=0)                                                                        CACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatcc     <  1:4405421/101‑6 (MQ=0)                                                                         cCGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatcca    <  1:911059/100‑7 (MQ=0)                                                                         ACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatcca    <  2:2154620/101‑7 (MQ=0)                                                                          CGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatccac   <  2:1707213/101‑8 (MQ=0)                                                                           GCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatccacg  >  1:4321997/1‑93 (MQ=0)                                                                                                |||||||||||||||||||||||||||||||||                                                GATCCACGCCCCCGCGGGGGGAGCGACTGCGCGGCGCTCGACCGGATGCGATAGGCGGCGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG................................................................................  <  NC_014034/1395925‑1395831 ................................................................................................................................TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGTGGTGCAGGGC  <  NC_014034/1397532‑1397486 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG