New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395899 =	204 (1.240)	33 (0.200)	6/138	27.0	0.15	intergenic (+711/‑220)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1434849	171 (0.720)					intergenic (‑628/‑330)	RCAP_rcc01334/RCAP_rcc01335	hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

GAACGCATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...........................................................................  <  NC_014034/1395939‑1395899 ........................................................................TCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAAGGCGC  <  NC_014034/1434849‑1434806                                          |||||||||||||||||||||||||||||||                                             ctggacacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGG                 <  2:55215/93‑1 (MQ=2) ctggacacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGG                 >  1:178977/9‑101 (MQ=2)  tggacacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGG                >  1:769344/8‑101 (MQ=2)  tggacacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGG                >  1:537297/8‑101 (MQ=2)  tggacacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGG                <  1:2141906/94‑1 (MQ=2)    gacacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGA              <  2:3793214/96‑1 (MQ=2)    gacacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGA              <  1:2302081/96‑1 (MQ=2)     acacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGgg             >  2:3531662/5‑99 (MQ=2)     acacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAG             <  2:2864458/97‑1 (MQ=2)     acacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAG             >  2:4227925/5‑101 (MQ=2)      cacCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGC            >  2:2610347/4‑101 (MQ=0)       ccCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCG           <  2:3823899/99‑1 (MQ=11)       cTCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCG           <  2:4039890/100‑1 (MQ=14)       acCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCG           <  2:4616541/99‑1 (MQ=11)        cCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGA          >  1:2000841/2‑101 (MQ=11)         CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAg         >  1:4040175/1‑100 (MQ=11)         CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC         <  2:3576413/101‑1 (MQ=11)          GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg        <  1:2325735/101‑2 (MQ=1)          GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg        <  2:3926512/101‑2 (MQ=1)           TTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgc       >  2:1780885/1‑99 (MQ=1)           TTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgc       <  2:2717086/101‑3 (MQ=1)           TTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgc       <  1:2929118/101‑3 (MQ=1)            TTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcg      >  1:521878/1‑98 (MQ=0)            TTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcg      >  2:3759387/1‑98 (MQ=0)              CGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCTCGGGGGGAGCGACgcggt    >  1:974879/1‑96 (MQ=0)              CGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGTGACgcggt    <  1:345879/101‑6 (MQ=0)               GATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggta   >  2:1255147/1‑95 (MQ=0)               GATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggta   <  1:455333/101‑7 (MQ=0)               GATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggta   >  1:2481658/1‑95 (MQ=0)               GATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggta   >  1:1089039/1‑95 (MQ=0)                ATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggtat  >  2:2358821/1‑94 (MQ=0)                ATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggtat  >  2:3830916/1‑94 (MQ=0)                ATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggtat  >  1:4201481/1‑94 (MQ=0)                                          |||||||||||||||||||||||||||||||                                             GAACGCATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...........................................................................  <  NC_014034/1395939‑1395899 ........................................................................TCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAAGGCGC  <  NC_014034/1434849‑1434806 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG