New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1396167 =139 (0.900)69 (0.450) 14/130 19.6 0.32 coding (49/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1396401 154 (0.650)coding (283/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

GTTTTTCGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.................................................................................  <  NC_014034/1396210‑1396167
...............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGCGTTTGTCTGGT  <  NC_014034/1396401‑1396356
                                            |||||||||||||||||||||||||||||||||||                                              
gatcgagGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGG                          >  2:850229/8‑101 (MQ=1)
gatcgagGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGG                          >  1:3868899/8‑101 (MQ=1)
  tcgagGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGG                        >  2:4425292/6‑101 (MQ=1)
  tcgagGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGG                        >  2:206285/6‑101 (MQ=1)
  tcgagGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGG                        <  1:2507218/96‑1 (MQ=1)
   cgagGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGG                       <  1:496224/97‑1 (MQ=1)
   cgagGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGG                       >  1:2700506/5‑101 (MQ=1)
    gagGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGG                      >  1:4471781/4‑101 (MQ=1)
    gagGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGG                      <  1:2991329/98‑1 (MQ=1)
    gagGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGG                      >  2:981971/4‑101 (MQ=1)
    gaCGCCGAGTTACGATCCACGCCCCCGCGGGGGGAGCGCCCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGG                      <  2:3349999/99‑1 (MQ=0)
     agGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGA                     <  1:2581699/99‑1 (MQ=1)
     agGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGA                     <  1:2141991/99‑1 (MQ=1)
     agGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGA                     <  2:340878/99‑1 (MQ=1)
       GCCGGGTTTGGACCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  1:869624/101‑1 (MQ=0)
       GCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  1:974881/101‑1 (MQ=1)
       GCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  1:3204648/101‑1 (MQ=1)
        CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCG                  <  2:3006223/101‑1 (MQ=1)
        CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCG                  <  1:572720/101‑1 (MQ=1)
         cgaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                 >  2:4612903/4‑101 (MQ=1)
          gaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAACGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                <  2:764895/99‑1 (MQ=1)
          gaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                >  1:2917010/3‑101 (MQ=1)
          gaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                <  1:3860529/99‑1 (MQ=1)
          gaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                <  2:2680248/99‑1 (MQ=1)
           aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACA               <  1:3095857/100‑1 (MQ=1)
           aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACA               >  2:2221824/2‑101 (MQ=1)
           aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACA               <  2:1752721/100‑1 (MQ=1)
            GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGaaacctcgg              <  2:1332394/101‑10 (MQ=0)
             TTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGt             <  1:2267642/101‑2 (MQ=14)
             TTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGg             >  1:1424812/1‑100 (MQ=14)
              TTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGtg            <  1:1808681/101‑3 (MQ=14)
              TTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGtg            >  1:218179/1‑99 (MQ=14)
              TTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGtg            >  2:2197567/1‑99 (MQ=14)
              TTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGtg            <  2:1610708/101‑3 (MQ=14)
              TTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGtg            <  1:4216720/101‑3 (MQ=14)
              TTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGtg            <  1:4390574/101‑3 (MQ=14)
               TCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGT           <  1:165982/101‑1 (MQ=14)
               TCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGT           <  1:782169/101‑1 (MQ=14)
               TCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGT           <  1:3940869/101‑1 (MQ=14)
               TCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGT           <  2:178334/101‑1 (MQ=14)
               TCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGGGT           >  1:1937866/1‑101 (MQ=14)
                CGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGTGTT          >  2:1727026/1‑101 (MQ=1)
                CGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTT          >  1:154476/1‑101 (MQ=17)
                CGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTT          >  1:4392637/1‑101 (MQ=17)
                CGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTT          <  1:1823222/101‑1 (MQ=17)
                CGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTT          <  1:3026687/101‑1 (MQ=17)
                CGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTT          >  1:4187166/1‑101 (MQ=17)
                CGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTT          <  2:1455556/101‑1 (MQ=17)
                 gacCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTg         <  1:4261340/98‑2 (MQ=12)
                 GATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGTGCGACAGTGTTg         <  1:2528256/101‑2 (MQ=12)
                 GATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTg         >  1:3158007/1‑100 (MQ=17)
                 GATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTg         >  2:233688/1‑100 (MQ=17)
                  ATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTga        <  1:3692723/101‑3 (MQ=17)
                  ATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTga        >  2:258215/1‑99 (MQ=17)
                  ATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTga        <  2:2494299/101‑3 (MQ=17)
                  ATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTga        >  2:1419031/1‑99 (MQ=17)
                  ATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTga        >  1:4507913/1‑99 (MQ=17)
                  ATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTga        <  1:4524058/101‑3 (MQ=17)
                   TCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgac       >  2:3143444/1‑98 (MQ=12)
                   TCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgac       >  1:477244/1‑98 (MQ=12)
                   TCCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgac       >  2:3607657/1‑98 (MQ=12)
                    CCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgacc      <  1:1780407/101‑5 (MQ=12)
                    CCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgacc      <  2:2164731/101‑5 (MQ=12)
                    CCACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgacc      >  2:3943959/1‑97 (MQ=12)
                     CACGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgacca     >  2:2890395/1‑96 (MQ=12)
                       CGCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgaccaca   <  1:691599/101‑8 (MQ=255)
                        GCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgaccacat  <  2:1409806/101‑9 (MQ=255)
                        GCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgaccacat  <  1:3489508/101‑9 (MQ=255)
                        GCCCCCGCGGGGGGAGCGACCGCGCAGACAAAGATCCGGCGCGGCGCGCGCCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGTGTTgaccacat  >  1:4225417/1‑93 (MQ=255)
                                            |||||||||||||||||||||||||||||||||||                                              
GTTTTTCGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.................................................................................  <  NC_014034/1396210‑1396167
...............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACAGCGTTTGTCTGGT  <  NC_014034/1396401‑1396356

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG