New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396198126 (0.800)40 (0.260) 9/132 23.5 0.21 coding (80/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1396705 = 177 (0.750)coding (587/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

CCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..............................................................................  >  NC_014034/1396155‑1396198
..............................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCTGTCCCTCA  >  NC_014034/1396705‑1396748
                                            ||||||||||||||||||||||||||||||||||                                            
gctcgcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGg                       >  2:3096203/10‑100 (MQ=0)
   cgcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                    <  2:2701087/95‑1 (MQ=0)
   cgcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                    >  1:3768479/7‑101 (MQ=0)
   cgcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                    >  2:4593709/7‑101 (MQ=0)
   cgcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                    <  2:1040619/95‑1 (MQ=0)
    gcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGgt                   >  2:4362149/6‑99 (MQ=0)
    gcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  2:24096/96‑1 (MQ=1)
    gcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  2:1370454/96‑1 (MQ=1)
    gcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  2:1135072/96‑1 (MQ=1)
    gcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  2:685449/96‑1 (MQ=1)
    gcggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  2:826403/96‑1 (MQ=1)
     cggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATC                  <  1:2026338/97‑1 (MQ=1)
      ggtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGGTCG                 >  2:439236/4‑101 (MQ=0)
       gtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  1:3430769/99‑1 (MQ=1)
       gtTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                >  2:1265337/3‑101 (MQ=1)
        tTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               >  2:2149569/2‑101 (MQ=1)
         TGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGGGTGGATCGAAA              >  2:1783993/1‑101 (MQ=1)
         TGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              <  2:1034116/101‑1 (MQ=1)
          GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             >  2:171963/1‑101 (MQ=1)
           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC            <  2:2302311/101‑1 (MQ=1)
           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC            <  2:2549532/101‑1 (MQ=1)
           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACC            >  2:472197/1‑101 (MQ=1)
            GTCGCTCCCCTCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCC           >  1:149586/1‑101 (MQ=1)
            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCC           >  2:4608724/1‑101 (MQ=1)
            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGGGGATCccaacac           >  2:3204231/1‑94 (MQ=0)
            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGGTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCC           >  2:2471955/1‑101 (MQ=1)
              CGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCGCCGCGGGGGCGTGGATCGAAACCCgc         >  1:3919459/1‑99 (MQ=1)
              CGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTACAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgc         >  2:1081152/1‑99 (MQ=1)
               GCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgcc        >  2:2959887/1‑98 (MQ=1)
               GCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgcc        <  2:346236/101‑4 (MQ=1)
               GCTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgcc        <  1:2911496/101‑4 (MQ=1)
                CTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgccc       >  2:363162/1‑97 (MQ=1)
                CTCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAACCgcca       >  2:1186824/1‑97 (MQ=0)
                 TCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgccac      >  2:1017286/1‑96 (MQ=1)
                 TCCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGGGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGGGTGGATCGAAACCCgccac      >  2:3942793/1‑96 (MQ=0)
                  CCCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGGGGGGGCGTGGATCGAAACCCgccacg     >  1:3922382/1‑95 (MQ=0)
                   CCCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgccacgt    >  2:938021/1‑94 (MQ=1)
                    CCCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgccacgtc   >  1:421990/1‑93 (MQ=0)
                     CCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgccacgtct  <  2:51778/101‑10 (MQ=0)
                     CCCGCGGGGGCGTGGATCGAAACATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCgccacgtct  >  2:355731/1‑92 (MQ=0)
                                            ||||||||||||||||||||||||||||||||||                                            
CCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..............................................................................  >  NC_014034/1396155‑1396198
..............................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCTGTCCCTCA  >  NC_014034/1396705‑1396748

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG