New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396204131 (0.810)55 (0.340) 16/136 19.1 0.26 coding (86/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1397434 = 179 (0.750)coding (1316/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

GCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCG...........................................................................  >  NC_014034/1396157‑1396204
................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCGTCATCAC  >  NC_014034/1397434‑1397476
                                                ||||||||||||||||||||||||||||||||                                           
ccggcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCG                        >  1:1087329/9‑101 (MQ=0)
ccggcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCG                        >  1:3759662/9‑101 (MQ=0)
 cggcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGg                       >  2:4355194/8‑100 (MQ=0)
  ggcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGcg                      >  2:1789652/7‑99 (MQ=0)
  ggcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTG                      >  1:3895311/7‑101 (MQ=0)
  ggcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTG                      >  1:2185480/7‑101 (MQ=0)
   gcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGG                     >  2:2897103/6‑101 (MQ=0)
   gcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGG                     <  2:3650078/96‑1 (MQ=0)
   gcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGG                     <  1:1600546/96‑1 (MQ=0)
     ccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  1:2928945/98‑1 (MQ=0)
     ccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   >  1:1510315/4‑101 (MQ=0)
     ccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGAGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   >  2:4160386/4‑101 (MQ=0)
      cgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATC                  >  1:3799599/3‑101 (MQ=1)
       gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 >  2:1910619/2‑101 (MQ=1)
       gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 >  1:4523734/2‑101 (MQ=1)
       gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  1:2679106/100‑1 (MQ=1)
       gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  1:1772665/100‑1 (MQ=1)
       gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 >  2:4387900/2‑101 (MQ=1)
        GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  1:615492/101‑1 (MQ=1)
        GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  2:2152904/101‑1 (MQ=1)
         CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               >  2:1687099/1‑101 (MQ=1)
         CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               <  1:1735309/101‑1 (MQ=1)
          GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              >  1:168826/1‑101 (MQ=1)
          GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              <  2:1079909/101‑1 (MQ=1)
          GTCCCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              <  1:632022/101‑1 (MQ=0)
           TCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             >  1:370675/1‑101 (MQ=1)
           TCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             <  1:2522760/101‑1 (MQ=1)
           TCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAAC             >  1:4118869/1‑101 (MQ=0)
             GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAC           <  2:4230477/101‑1 (MQ=1)
             GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAC           <  1:1373809/101‑1 (MQ=1)
              CTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACC          <  1:1128933/101‑1 (MQ=1)
              CTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACC          >  2:3573498/1‑101 (MQ=1)
               cCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCc         <  1:2147643/100‑2 (MQ=1)
               TCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCc         >  1:2878788/1‑100 (MQ=0)
               TCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCc         >  2:989227/1‑100 (MQ=1)
               TCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCc         <  1:4651127/101‑2 (MQ=1)
               TCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCc         >  1:3501136/1‑100 (MQ=1)
                CCCCCCGCGGGGGCGTGTATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCcc        >  1:1894521/1‑99 (MQ=0)
                CCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCcc        <  2:4080426/101‑3 (MQ=1)
                CCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCcc        <  1:2897319/101‑3 (MQ=1)
                CCCCCCGCGGGGGCGTGCATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCcc        <  2:1833405/101‑3 (MQ=0)
                 CCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccg       <  2:1947760/101‑4 (MQ=0)
                 CCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccg       >  1:840427/1‑98 (MQ=0)
                  CCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccga      >  1:1966718/1‑97 (MQ=0)
                  CCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccga      >  1:4110960/1‑97 (MQ=0)
                   CCCGCGGGGGCGTGGATCGAAACGCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccgaa     <  2:4174014/101‑6 (MQ=2)
                   CCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccgaa     >  2:1372603/1‑96 (MQ=0)
                   CCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccgaa     <  2:443600/101‑6 (MQ=0)
                   CCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccgaa     <  1:4434503/101‑6 (MQ=0)
                    CCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccgaac    >  1:1231521/1‑95 (MQ=0)
                    CCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccgaac    <  2:2935904/101‑7 (MQ=0)
                     CGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccgaacc   <  2:3461956/101‑8 (MQ=0)
                     CGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccgaacc   <  2:1460979/101‑8 (MQ=0)
                      GCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccgaacct  <  2:4108548/101‑9 (MQ=0)
                      GCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCccgaacct  <  2:3406895/101‑9 (MQ=0)
                                                ||||||||||||||||||||||||||||||||                                           
GCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCG...........................................................................  >  NC_014034/1396157‑1396204
................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCGTCATCAC  >  NC_014034/1397434‑1397476

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG