New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396507 =	156 (0.970)	39 (0.240)	10/136	23.3	0.20	coding (389/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397935	147 (0.620)					intergenic (+239/+1659)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

AGTCCCACGAAAGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...........................................................................  <  NC_014034/1396553‑1396507 ...............................................................................AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGTTGGTGAG  <  NC_014034/1397935‑1397893                                                ||||||||||||||||||||||||||||||||                                            cccccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCG                       <  2:2453067/93‑1 (MQ=0)   cccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGG                     >  1:4298394/7‑101 (MQ=0)    ccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGG                    >  1:4555516/6‑101 (MQ=0)    ccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGG                    >  1:4510379/6‑101 (MQ=0)    ccattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGG                    <  1:3929405/96‑1 (MQ=0)     cattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGG                   <  2:2795852/97‑1 (MQ=0)     cattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGG                   <  1:4473903/97‑1 (MQ=0)     cattGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGCCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGG                   >  2:2867668/5‑101 (MQ=0)      attGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGG                  >  1:608700/4‑101 (MQ=0)      attGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGG                  <  1:1844075/98‑1 (MQ=0)      attGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGG                  <  2:1943675/98‑1 (MQ=0)       ttGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGg                 >  2:3707979/3‑100 (MQ=0)        tGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGcg                >  2:1508907/2‑99 (MQ=0)        tGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAG                >  1:898733/2‑101 (MQ=1)        tGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAG                >  2:2704355/2‑101 (MQ=1)        tGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAG                <  1:1956997/100‑1 (MQ=1)        tGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAG                >  1:554453/2‑101 (MQ=1)         GAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  1:959619/101‑1 (MQ=1)         GAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  2:2351041/1‑101 (MQ=1)         GAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTAACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  1:1533124/101‑1 (MQ=0)          AAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCG              <  2:4222805/101‑1 (MQ=1)          AAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCG              <  2:1315789/101‑1 (MQ=1)           AAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA             <  1:3671143/101‑1 (MQ=1)             gctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGATCGACc           >  1:425582/4‑100 (MQ=0)             gctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACc           <  2:2488923/98‑2 (MQ=1)              ctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACca          <  1:4272097/99‑3 (MQ=1)               tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac         <  1:3471421/100‑4 (MQ=1)               tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac         <  1:4053380/100‑4 (MQ=1)               tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac         >  1:472245/2‑98 (MQ=1)               tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac         >  1:476068/2‑98 (MQ=1)                GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCTAAACCGTGACCAGAGCCCCGGCGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacg        >  2:3830265/1‑97 (MQ=0)                GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacg        >  1:273645/1‑97 (MQ=1)                 TTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgt       >  2:3884376/1‑96 (MQ=1)                 TTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgt       >  2:622734/1‑96 (MQ=1)                   TCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtcc     <  2:1984671/101‑8 (MQ=0)                   TCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtcc     >  2:250422/1‑94 (MQ=0)                   TCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtcc     <  1:4081883/101‑8 (MQ=0)                     GATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtccag   >  1:2395840/1‑92 (MQ=0)                      ATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacgtccagc  <  1:3650513/101‑11 (MQ=0)                                                ||||||||||||||||||||||||||||||||                                            AGTCCCACGAAAGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...........................................................................  <  NC_014034/1396553‑1396507 ...............................................................................AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGTTGGTGAG  <  NC_014034/1397935‑1397893 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG