New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396705 =	180 (1.130)	43 (0.270)	9/134	23.8	0.17	coding (587/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397532	229 (0.960)					coding (1414/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAAGGGCATCGTGGCAGCATATGAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG................................................................................  <  NC_014034/1396804‑1396705 .....................................................................................................................................TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGTGGTGCAGGGC  <  NC_014034/1397532‑1397486                                                                                                     |||||||||||||||||||||||||||||||||                                                CGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAAGGGCATCGTGGCAGCATATGAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGG                                                                                 >  1:2910152/1‑101 (MQ=11)                                                          gatctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGG                        >  1:2253792/11‑101 (MQ=0)                                                            tctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCTGCGGGGGG                      <  2:4522955/93‑1 (MQ=0)                                                            tctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGG                      <  1:3931295/93‑1 (MQ=0)                                                            tctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGG                      >  1:2719672/9‑101 (MQ=0)                                                             ctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGg                     >  1:103860/8‑100 (MQ=0)                                                             ctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGg                     >  1:3486143/8‑100 (MQ=0)                                                             ctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGA                     <  2:3662002/94‑1 (MQ=0)                                                              tacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAG                    >  2:1915654/7‑101 (MQ=1)                                                              tacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAG                    >  1:4246383/7‑101 (MQ=1)                                                              tacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAG                    >  1:3299739/7‑101 (MQ=1)                                                               acgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC                   >  2:579777/6‑101 (MQ=1)                                                               acgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  2:2296662/96‑1 (MQ=1)                                                               acgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  2:1833530/96‑1 (MQ=1)                                                               acgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC                   <  1:4491855/96‑1 (MQ=1)                                                                   cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC               <  1:394476/100‑1 (MQ=1)                                                                   cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC               <  1:1834991/100‑1 (MQ=1)                                                                    GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG              <  1:1380751/101‑1 (MQ=1)                                                                    GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG              <  2:2026198/101‑1 (MQ=1)                                                                    GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG              >  1:3897068/1‑101 (MQ=1)                                                                    GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG              >  1:1883622/1‑101 (MQ=1)                                                                    GTTTCGATCCACGCCCACGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG              >  1:4486819/1‑101 (MQ=1)                                                                     TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             >  1:1034040/1‑101 (MQ=1)                                                                     TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             >  2:3071136/1‑101 (MQ=1)                                                                     TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             >  1:1806798/1‑101 (MQ=1)                                                                     TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             <  1:3243559/101‑1 (MQ=1)                                                                     TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             >  1:264612/1‑101 (MQ=1)                                                                     TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGG             >  1:4353667/1‑101 (MQ=1)                                                                      TTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGc            >  1:1034456/1‑100 (MQ=1)                                                                       TCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGcg           <  2:3724353/101‑3 (MQ=1)                                                                        CGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGG          >  1:1881713/1‑101 (MQ=1)                                                                        CGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGG          >  2:2653565/1‑101 (MQ=1)                                                                          ATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGga        >  1:2154770/1‑99 (MQ=1)                                                                           TCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgat       <  2:240526/101‑4 (MQ=0)                                                                           TCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgat       <  1:1601526/101‑4 (MQ=0)                                                                           TCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGCGGGAGCGACCGGCGGgac       >  1:1603174/1‑98 (MQ=0)                                                                            CCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatc      <  1:2302473/101‑5 (MQ=0)                                                                             CACGCCCCCGCGGGGGGAGCGGCGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatcc     >  1:3438958/1‑96 (MQ=0)                                                                             CACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatcc     <  2:2988851/101‑6 (MQ=0)                                                                             CACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatcc     <  1:4405421/101‑6 (MQ=0)                                                                              cCGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatcca    <  1:911059/100‑7 (MQ=0)                                                                              ACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatcca    <  2:2154620/101‑7 (MQ=0)                                                                               CGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatccac   <  2:1707213/101‑8 (MQ=0)                                                                                GCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGgatccacg  >  1:4321997/1‑93 (MQ=0)                                                                                                     |||||||||||||||||||||||||||||||||                                                CGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAAGGGCATCGTGGCAGCATATGAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG................................................................................  <  NC_014034/1396804‑1396705 .....................................................................................................................................TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGTGGTGCAGGGC  <  NC_014034/1397532‑1397486 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG