New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396737153 (0.990)51 (0.330) 4/130 27.9 0.24 coding (619/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1396969 = 174 (0.730)coding (851/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

ATCCGTCATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................  >  NC_014034/1396696‑1396737
.............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGT  >  NC_014034/1396969‑1397013
                                          |||||||||||||||||||||||||||||||||||                                             
gtgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGG                       <  2:370638/92‑1 (MQ=1)
 tgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGA                      >  1:901269/9‑101 (MQ=1)
   ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                    <  1:362189/95‑1 (MQ=1)
   ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                    <  1:2866016/95‑1 (MQ=1)
    cgttgCGTCGCTCCCCCCGCGGGGGCCTGGATCGAAACACCCCGAACCTGTCGACGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                   <  2:774801/96‑1 (MQ=0)
    cgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGGGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGCCGTGGATCG                   >  2:4619420/6‑101 (MQ=0)
    cgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                   <  1:1588754/96‑1 (MQ=1)
     gctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                  >  2:573027/5‑101 (MQ=1)
      ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 <  2:1510206/98‑1 (MQ=1)
      ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 <  1:4626361/98‑1 (MQ=1)
      ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 <  1:4388192/98‑1 (MQ=1)
      ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 >  1:4180787/4‑101 (MQ=1)
       tgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                <  2:2065067/99‑1 (MQ=1)
       tgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                >  2:2043302/3‑101 (MQ=1)
       tgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                >  2:3025890/3‑101 (MQ=1)
        gCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAGACCTCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               <  1:3991238/100‑1 (MQ=0)
        gCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               <  2:1202685/100‑1 (MQ=1)
         CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA              <  2:2771772/101‑1 (MQ=1)
          GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT             <  1:3312653/101‑1 (MQ=1)
          GTCGCGCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT             <  1:4581766/101‑1 (MQ=1)
           TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATC            <  1:3926598/101‑1 (MQ=1)
            CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCg           <  1:2927772/101‑2 (MQ=1)
            CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCg           <  2:1231429/101‑2 (MQ=1)
            CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCg           <  2:4330274/101‑2 (MQ=1)
            CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCg           <  1:1673210/101‑2 (MQ=1)
            CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGGGGATCGACACATCg           >  2:2297310/1‑100 (MQ=0)
             GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCga          >  2:2015063/1‑99 (MQ=1)
              CTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgat         >  2:279151/1‑98 (MQ=1)
              CTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgat         >  1:202806/1‑98 (MQ=1)
               cCCCCCCGCGGGGGCGTGGATCGAAACCCCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatg        <  1:2765150/100‑5 (MQ=0)
               cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatg        <  1:1947330/100‑5 (MQ=1)
               cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatg        <  2:529006/100‑5 (MQ=1)
               TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGCACACCGATACCGCGTCGCTCCCACCGCGGGGGCGTGGATCGAAACATCgatg        >  1:3831201/1‑97 (MQ=0)
               TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATagatg        >  2:1847543/1‑96 (MQ=1)
               TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatg        >  2:1088950/1‑97 (MQ=1)
               TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatg        >  1:410738/1‑97 (MQ=1)
               TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatg        >  2:3078909/1‑97 (MQ=1)
                CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatga       >  1:4088146/1‑96 (MQ=1)
                 CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgat      <  1:989310/101‑7 (MQ=1)
                  CCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatc     <  2:2188897/101‑8 (MQ=0)
                  CCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatc     >  1:1722554/1‑94 (MQ=0)
                  CCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatc     <  1:2553121/101‑8 (MQ=0)
                  CCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatc     <  1:2628110/101‑8 (MQ=0)
                  CCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatc     >  1:2610532/1‑94 (MQ=0)
                   CCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGCTCGAAACATCgatgatca    >  2:521830/1‑93 (MQ=0)
                   CCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatca    <  2:4324849/101‑9 (MQ=0)
                   CCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatca    <  1:3424577/101‑9 (MQ=0)
                    CCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatcaa   <  1:558822/101‑10 (MQ=0)
                    CCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatcaa   <  1:3283737/101‑10 (MQ=0)
                     CGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatcaaa  <  1:4333768/101‑11 (MQ=0)
                     CGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCgatgatcaaa  >  1:4095430/1‑91 (MQ=0)
                                          |||||||||||||||||||||||||||||||||||                                             
ATCCGTCATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................  >  NC_014034/1396696‑1396737
.............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGT  >  NC_014034/1396969‑1397013

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 23 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG