New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396802	182 (1.180)	41 (0.270)	8/130	24.1	0.31	coding (684/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397766 =	0 (0.000)					intergenic (+70/+1828)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

ATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC............................................................................  >  NC_014034/1396761‑1396802 .............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCCAG  >  NC_014034/1397766‑1397806                                           |||||||||||||||||||||||||||||||||||                                          ttgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGG                   >  1:3115117/9‑101 (MQ=255)  tgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGA                  <  2:4271809/94‑1 (MQ=255)  tgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGA                  >  1:1156862/8‑101 (MQ=255)  tgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGA                  >  1:832480/8‑101 (MQ=255)    ggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC                <  2:1608829/96‑1 (MQ=9)    ggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC                <  2:1229282/96‑1 (MQ=9)    ggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC                <  1:1076318/96‑1 (MQ=9)     gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG               >  2:2041603/5‑101 (MQ=9)     gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG               <  1:1459308/97‑1 (MQ=9)      acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA              <  2:1786547/98‑1 (MQ=9)      acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA              >  1:1109907/4‑101 (MQ=9)      acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA              <  1:3941613/98‑1 (MQ=9)       cgGAGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAA             <  1:3533381/99‑1 (MQ=9)        gGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAA            >  1:695362/2‑101 (MQ=14)        gGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAA            <  1:1200123/100‑1 (MQ=14)         GAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAAC           >  1:3051868/1‑101 (MQ=14)          AGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACt          <  2:4624417/101‑2 (MQ=1)          AGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACt          >  2:2575366/1‑100 (MQ=1)          AGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACt          <  1:1598662/101‑2 (MQ=1)          AGTCGCTCCCCCCGCGCGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACt          >  1:4074567/1‑100 (MQ=0)           GTCTCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTACAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtg         <  1:3939697/101‑3 (MQ=0)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtgg        >  2:4384094/1‑98 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGT        >  2:3812974/1‑101 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGT        <  1:689005/101‑1 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGT        <  1:2269203/101‑1 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAAatgac       >  2:1449939/1‑96 (MQ=0)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG       >  1:1357736/1‑101 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG       >  1:4343960/1‑101 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG       <  2:1658077/101‑1 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG       <  1:2967973/101‑1 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG       >  2:1958769/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGc      >  2:89050/1‑100 (MQ=0)              GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGc      >  2:1303562/1‑100 (MQ=0)              GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGc      >  1:881066/1‑100 (MQ=0)               CTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGcc     <  2:1474832/101‑3 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGccg    <  2:46760/101‑4 (MQ=0)                TCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGccg    >  2:702149/1‑98 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGccgg   >  2:2362958/1‑97 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGccgg   >  1:143305/1‑97 (MQ=0)                  CCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGccggt  >  2:131455/1‑96 (MQ=0)                  CCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTGccggt  >  1:3769752/1‑96 (MQ=0)                                           |||||||||||||||||||||||||||||||||||                                          ATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC............................................................................  >  NC_014034/1396761‑1396802 .............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGTGTCCAG  >  NC_014034/1397766‑1397806 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG