BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396902 =	158 (0.960)	47 (0.290)	6/138	27.0	0.22	coding (784/1578 nt)	RCAP_rcc01307	hypothetical protein
*	?	NC_014034	= 1397271	168 (0.710)	47 (0.290)	6/138	27.0	0.22	coding (1153/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.


TTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGGCGGAAGCCGATGCGGCCGCGCAGGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.............................................................................  <  NC_014034/1396999‑1396902


.................................................................................................................................CGCGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCGGA  <  NC_014034/1397271‑1397226


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TTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGGCGGAAGCCGATGCGGCCGCGCAGGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCct                                                                            >  1:1347308/1‑99 (MQ=1)


                                                        gttcggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGG                    <  1:1231521/93‑1 (MQ=0)


                                                        gttcggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGG                    >  2:2935904/9‑101 (MQ=0)


                                                         ttcggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGG                   >  2:443600/8‑101 (MQ=0)


                                                         ttcggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGG                   >  1:4434503/8‑101 (MQ=0)


                                                         ttcggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGG                   <  2:1372603/94‑1 (MQ=0)


                                                         ttcggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGCGTTTCGATCCACGCCCCCGCGGG                   >  2:4174014/8‑101 (MQ=2)


                                                          tcggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGG                  <  1:4110960/95‑1 (MQ=0)


                                                          tcggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGG                  <  1:1966718/95‑1 (MQ=0)


                                                           cggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGG                 >  2:1947760/6‑101 (MQ=0)


                                                           cggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGG                 <  1:840427/96‑1 (MQ=0)


                                                            ggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATGCACGCCCCCGCGGGGGG                >  2:1833405/5‑101 (MQ=0)


                                                            ggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGG                >  2:4080426/5‑101 (MQ=1)


                                                            ggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGG                >  1:2897319/5‑101 (MQ=1)


                                                            ggggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATACACGCCCCCGCGGGGGG                <  1:1894521/97‑1 (MQ=0)


                                                             ggggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGA               <  1:2878788/97‑1 (MQ=0)


                                                             gggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGg               >  1:2147643/4‑100 (MQ=1)


                                                             gggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGA               >  1:4651127/4‑101 (MQ=1)


                                                             gggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGA               <  2:989227/98‑1 (MQ=1)


                                                             gggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGA               <  1:3501136/98‑1 (MQ=1)


                                                              ggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAG              >  1:1128933/3‑101 (MQ=1)


                                                              ggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAG              <  2:3573498/99‑1 (MQ=1)


                                                               gTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGC             >  1:1373809/2‑101 (MQ=1)


                                                               gTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGC             >  2:4230477/2‑101 (MQ=1)


                                                                 GTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGA           <  1:4118869/101‑1 (MQ=0)


                                                                 GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGA           >  1:2522760/1‑101 (MQ=1)


                                                                 GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGA           <  1:370675/101‑1 (MQ=1)


                                                                  TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGGGAC          >  1:632022/1‑101 (MQ=0)


                                                                  TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC          >  2:1079909/1‑101 (MQ=1)


                                                                  TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC          <  1:168826/101‑1 (MQ=1)


                                                                   TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG         <  2:1687099/101‑1 (MQ=1)


                                                                   TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG         >  1:1735309/1‑101 (MQ=1)


                                                                    TCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGc        >  1:615492/1‑100 (MQ=1)


                                                                    TCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGc        >  2:2152904/1‑100 (MQ=1)


                                                                     CGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc       <  2:4387900/101‑3 (MQ=1)


                                                                     CGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc       <  2:1910619/101‑3 (MQ=1)


                                                                     CGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc       >  1:1772665/1‑99 (MQ=1)


                                                                     CGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc       <  1:4523734/101‑3 (MQ=1)


                                                                     CGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc       >  1:2679106/1‑99 (MQ=1)


                                                                      GATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCG      <  1:3799599/101‑1 (MQ=1)


                                                                       ATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACTCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGg     <  2:4160386/101‑2 (MQ=0)


                                                                       ATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGg     >  1:2928945/1‑100 (MQ=0)


                                                                       ATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGg     <  1:1510315/101‑2 (MQ=0)


                                                                         CCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGggc   <  2:2897103/101‑4 (MQ=0)


                                                                         CCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGggc   >  2:3650078/1‑98 (MQ=0)


                                                                         CCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGggc   >  1:1600546/1‑98 (MQ=0)


                                                                          CACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGggcc  <  1:2185480/101‑5 (MQ=0)


                                                                          CACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGggcc  <  1:3895311/101‑5 (MQ=0)


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TTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGGCGGAAGCCGATGCGGCCGCGCAGGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.............................................................................  <  NC_014034/1396999‑1396902


.................................................................................................................................CGCGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCGGA  <  NC_014034/1397271‑1397226

Base quality scores:


ATCG

< 3 ≤


ATCG

< 18 ≤


ATCG

< 25 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG