New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396968 =	148 (0.960)	50 (0.320)	17/130	17.7	0.25	coding (850/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397598	152 (0.640)					coding (1480/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

ACCAACGACGAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC.......................................................................................................................................  <  NC_014034/1397017‑1396968 .....................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCAGCGCGGCGCTGAGGCGGGCCATGATCGGGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC  <  NC_014034/1397598‑1397499                                                   |||||||||||||||||||||||||||||||||||                                                                                                     gatgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCC                                                                                      <  1:1474941/91‑1 (MQ=0) gatgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCC                                                                                      >  1:2002964/11‑101 (MQ=0)  atgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCC                                                                                     >  1:2627496/10‑101 (MQ=0)  atgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCC                                                                                     >  2:1808555/10‑101 (MQ=0)  atgcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCC                                                                                     <  1:20402/92‑1 (MQ=0)  atgcggccaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCC                                                                                     >  2:131680/10‑101 (MQ=0)   tggggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                                                                                    <  2:2394253/93‑1 (MQ=0)   ggcggtcaAGCTGATGTTTCGATCCACGCCCCCCCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCC                                                                                    <  1:4020209/93‑1 (MQ=0)    gcggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCG                                                                                   >  2:2507044/8‑101 (MQ=0)     cggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGC                                                                                  >  2:861627/7‑101 (MQ=0)      ggtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCG                                                                                 >  2:546127/6‑101 (MQ=1)       gtcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGG                                                                                >  1:3786518/5‑101 (MQ=1)        tcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGG                                                                               >  1:2427068/4‑101 (MQ=1)        tcaAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGG                                                                               <  1:1304410/98‑1 (MQ=1)         caAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  1:191034/3‑101 (MQ=1)         caAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  2:3797682/3‑101 (MQ=1)         caAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              <  2:756037/99‑1 (MQ=1)         caAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  1:279126/3‑101 (MQ=1)         caAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  1:3774409/3‑101 (MQ=1)          aAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGG                                                                             >  1:1546070/2‑101 (MQ=1)           AGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGG                                                                            <  1:333876/101‑1 (MQ=1)            GCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGg                                                                           >  2:3317078/1‑100 (MQ=1)            GCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGg                                                                           >  1:935356/1‑100 (MQ=1)            GCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                           <  2:2371261/101‑1 (MQ=1)            GCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                           <  1:579838/101‑1 (MQ=1)            GCTGATGTTTCGAACCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                           <  1:2549952/101‑1 (MQ=1)             CTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                          >  2:4370857/1‑101 (MQ=1)              TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         <  1:132456/101‑1 (MQ=1)              TGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         <  2:4345657/101‑1 (MQ=1)               GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCG                                                                        >  1:1670170/1‑101 (MQ=1)               GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                        <  2:3688872/101‑1 (MQ=1)                ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGc                                                                       >  1:4301652/1‑100 (MQ=1)                  GTTTCTATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                     <  2:2526521/101‑1 (MQ=1)                  GTTTCGATCCACGCGCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGAGGGGGGAGCGACG                                                                     <  2:3096506/101‑1 (MQ=0)                  GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                     >  1:2199647/1‑101 (MQ=1)                   TTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGa                                                                    >  1:2177997/1‑100 (MQ=1)                    TTCGATCCACGCCCCCGCGGGGGGAGGGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGat                                                                   <  2:2184941/101‑3 (MQ=1)                    TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGat                                                                   >  1:1960256/1‑99 (MQ=1)                    TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGat                                                                   <  1:3661711/101‑3 (MQ=1)                     TCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGatc                                                                  >  1:2067976/1‑98 (MQ=0)                      CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 <  2:3896783/101‑5 (MQ=1)                      CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 <  1:131694/101‑5 (MQ=1)                      CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 >  2:3109446/1‑97 (MQ=1)                      CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 >  2:2994246/1‑97 (MQ=1)                      CGATCCACGCCCCCGCGGCGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 <  2:1603069/101‑5 (MQ=0)                       GATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcga                                                                >  2:1062295/1‑96 (MQ=1)                       GATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGaccga                                                                >  2:2205582/1‑96 (MQ=1)                        ATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcgag                                                               >  2:1565005/1‑95 (MQ=0)                        ATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcgag                                                               >  1:3718265/1‑95 (MQ=0)                           CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcgagccc                                                            <  2:3485885/101‑10 (MQ=0)                                                                                     GGTTTCGATCCACGCCCCCGGGGGGGGAGCGACGTCAGCGCGGCGCTGAGGCGGGCCATGATCGGGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC  <  1:1224676/101‑1 (MQ=1)                                                   |||||||||||||||||||||||||||||||||||                                                                                                     ACCAACGACGAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC.......................................................................................................................................  <  NC_014034/1397017‑1396968 .....................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCAGCGCGGCGCTGAGGCGGGCCATGATCGGGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC  <  NC_014034/1397598‑1397499 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG