New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1397100 =151 (0.990)38 (0.250) 7/128 24.6 0.20 coding (982/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1397598 151 (0.640)coding (1480/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

CGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC........................................................................................................................................  <  NC_014034/1397141‑1397100
..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCAGCGCGGCGCTGAGGCGGGCCATGATCGGGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC  <  NC_014034/1397598‑1397499
                                          ||||||||||||||||||||||||||||||||||||                                                                                                    
tcaagctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGG                                                                               <  1:1304410/91‑1 (MQ=1)
tcaagctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGG                                                                               >  1:2427068/11‑101 (MQ=1)
 caagctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              <  2:756037/92‑1 (MQ=1)
 caagctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  2:3797682/10‑101 (MQ=1)
 caagctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  1:191034/10‑101 (MQ=1)
 caagctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  1:3774409/10‑101 (MQ=1)
 caagctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  1:279126/10‑101 (MQ=1)
  aagctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGG                                                                             >  1:1546070/9‑101 (MQ=1)
   agctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGG                                                                            <  1:333876/94‑1 (MQ=1)
    gctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGg                                                                           >  2:3317078/7‑100 (MQ=1)
    gctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGg                                                                           >  1:935356/7‑100 (MQ=1)
    gctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                           <  2:2371261/95‑1 (MQ=1)
    gctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                           <  1:579838/95‑1 (MQ=1)
    gctgatGTTTCGAACCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                           <  1:2549952/95‑1 (MQ=1)
     ctgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                          >  2:4370857/6‑101 (MQ=1)
      tgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         <  2:4345657/97‑1 (MQ=1)
      tgatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         <  1:132456/97‑1 (MQ=1)
       gatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCG                                                                        >  1:1670170/4‑101 (MQ=1)
       gatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                        <  2:3688872/98‑1 (MQ=1)
        atGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGc                                                                       >  1:4301652/3‑100 (MQ=1)
          GTTTCTATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                     <  2:2526521/101‑1 (MQ=1)
          GTTTCGATCCACGCGCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGAGGGGGGAGCGACG                                                                     <  2:3096506/101‑1 (MQ=0)
          GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                     >  1:2199647/1‑101 (MQ=1)
           TTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGa                                                                    >  1:2177997/1‑100 (MQ=1)
            TTCGATCCACGCCCCCGCGGGGGGAGGGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGat                                                                   <  2:2184941/101‑3 (MQ=1)
            TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGat                                                                   >  1:1960256/1‑99 (MQ=1)
            TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGat                                                                   <  1:3661711/101‑3 (MQ=1)
             TCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGatc                                                                  >  1:2067976/1‑98 (MQ=0)
              CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 <  2:3896783/101‑5 (MQ=1)
              CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 <  1:131694/101‑5 (MQ=1)
              CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 >  2:3109446/1‑97 (MQ=1)
              CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 >  2:2994246/1‑97 (MQ=1)
              CGATCCACGCCCCCGCGGCGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 <  2:1603069/101‑5 (MQ=0)
               GATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcga                                                                >  2:1062295/1‑96 (MQ=1)
               GATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGaccga                                                                >  2:2205582/1‑96 (MQ=1)
                ATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcgag                                                               >  1:3718265/1‑95 (MQ=0)
                ATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcgag                                                               >  2:1565005/1‑95 (MQ=0)
                   CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcgagccc                                                            <  2:3485885/101‑10 (MQ=0)
                                                                             GGTTTCGATCCACGCCCCCGGGGGGGGAGCGACGTCAGCGCGGCGCTGAGGCGGGCCATGATCGGGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC  <  1:1224676/101‑1 (MQ=1)
                                          ||||||||||||||||||||||||||||||||||||                                                                                                    
CGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC........................................................................................................................................  <  NC_014034/1397141‑1397100
..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCAGCGCGGCGCTGAGGCGGGCCATGATCGGGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC  <  NC_014034/1397598‑1397499

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG