New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1397233 =	168 (1.030)	51 (0.310)	12/138	22.1	0.23	coding (1115/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397271	168 (0.710)					coding (1153/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GCGTGCGCGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.............................................................................  <  NC_014034/1397276‑1397233 ...........................................................................CGCGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCGGA  <  NC_014034/1397271‑1397226                                             |||||||||||||||||||||||||||||||                                               aggttcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGC                      >  2:4108548/9‑101 (MQ=0) aggttcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGC                      >  2:3406895/9‑101 (MQ=0)  ggttcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCG                     >  2:3461956/8‑101 (MQ=0)  ggttcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCG                     >  2:1460979/8‑101 (MQ=0)   gttcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGG                    <  1:1231521/95‑1 (MQ=0)   gttcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGG                    >  2:2935904/7‑101 (MQ=0)    ttcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGG                   >  2:443600/6‑101 (MQ=0)    ttcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGG                   >  1:4434503/6‑101 (MQ=0)    ttcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGG                   <  2:1372603/96‑1 (MQ=0)    ttcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGCGTTTCGATCCACGCCCCCGCGGG                   >  2:4174014/6‑101 (MQ=2)     tcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGG                  <  1:4110960/97‑1 (MQ=0)     tcggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGG                  <  1:1966718/97‑1 (MQ=0)      cggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGG                 >  2:1947760/4‑101 (MQ=0)      cggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGG                 <  1:840427/98‑1 (MQ=0)       ggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATGCACGCCCCCGCGGGGGG                >  2:1833405/3‑101 (MQ=0)       ggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGG                >  1:2897319/3‑101 (MQ=1)       ggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGG                >  2:4080426/3‑101 (MQ=1)       ggGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATACACGCCCCCGCGGGGGG                <  1:1894521/99‑1 (MQ=0)        ggggGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGA               <  1:2878788/97‑1 (MQ=0)        gGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGg               >  1:2147643/2‑100 (MQ=1)        gGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGA               >  1:4651127/2‑101 (MQ=1)        gGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGA               <  2:989227/100‑1 (MQ=1)        gGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGA               <  1:3501136/100‑1 (MQ=1)         GGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAG              >  1:1128933/1‑101 (MQ=1)         GGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAG              <  2:3573498/101‑1 (MQ=1)          GTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGC             >  1:1373809/1‑101 (MQ=1)          GTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGC             >  2:4230477/1‑101 (MQ=1)            GTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGA           <  1:4118869/101‑1 (MQ=0)            GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGA           <  1:370675/101‑1 (MQ=1)            GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGA           >  1:2522760/1‑101 (MQ=1)             TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGGGAC          >  1:632022/1‑101 (MQ=0)             TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC          <  1:168826/101‑1 (MQ=1)             TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC          >  2:1079909/1‑101 (MQ=1)              TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG         >  1:1735309/1‑101 (MQ=1)              TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG         <  2:1687099/101‑1 (MQ=1)               TCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGc        >  1:615492/1‑100 (MQ=1)               TCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGc        >  2:2152904/1‑100 (MQ=1)                CGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc       <  2:4387900/101‑3 (MQ=1)                CGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc       <  1:4523734/101‑3 (MQ=1)                CGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc       >  1:1772665/1‑99 (MQ=1)                CGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc       >  1:2679106/1‑99 (MQ=1)                CGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcc       <  2:1910619/101‑3 (MQ=1)                 GATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCG      <  1:3799599/101‑1 (MQ=1)                  ATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACTCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGg     <  2:4160386/101‑2 (MQ=0)                  ATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGg     >  1:2928945/1‑100 (MQ=0)                  ATCCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGg     <  1:1510315/101‑2 (MQ=0)                    CCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGggc   >  2:3650078/1‑98 (MQ=0)                    CCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGggc   >  1:1600546/1‑98 (MQ=0)                    CCACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGggc   <  2:2897103/101‑4 (MQ=0)                     CACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGggcc  <  1:2185480/101‑5 (MQ=0)                     CACGCCCCCGCGGGGGGAGCGACGCAGCGGCACCAGAAGACCGTCTTCGGGACGCCGCGGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGggcc  <  1:3895311/101‑5 (MQ=0)                                             |||||||||||||||||||||||||||||||                                               GCGTGCGCGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.............................................................................  <  NC_014034/1397276‑1397233 ...........................................................................CGCGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCGGA  <  NC_014034/1397271‑1397226 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG