New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1397401	156 (0.980)	52 (0.330)	3/134	29.7	0.26	coding (1283/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397499 =	134 (0.560)					coding (1381/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CCAGACGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTC..............................................................................  >  NC_014034/1397358‑1397401 .............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATG  >  NC_014034/1397499‑1397543                                             |||||||||||||||||||||||||||||||||                                              tcaagattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTG                       >  2:605887/11‑101 (MQ=1)  caagattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGG                      <  1:3209641/92‑1 (MQ=1)  caagattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGG                      <  2:3194019/92‑1 (MQ=1)  caagattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGG                      <  1:2860000/92‑1 (MQ=1)   aagattcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGA                     >  2:4072194/9‑101 (MQ=1)      attcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  1:3400467/96‑1 (MQ=1)       ttcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  1:2222085/5‑101 (MQ=1)       ttcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  1:2635635/5‑101 (MQ=1)        tcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  2:439538/98‑1 (MQ=1)        tcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  1:3856527/4‑101 (MQ=1)        tcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  1:1535494/98‑1 (MQ=1)        tcaGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  1:1929326/4‑101 (MQ=1)         caGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  1:2800545/99‑1 (MQ=1)         caGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  1:4535998/3‑101 (MQ=1)         caGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  1:1503479/3‑101 (MQ=1)         caGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATAGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCCCGGGGGCGTGGATCGGAA               >  2:760971/3‑101 (MQ=0)          aGTNGNTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  1:1314756/100‑1 (MQ=1)          aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  2:2796313/2‑101 (MQ=32)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA             <  2:708896/101‑1 (MQ=1)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA             <  2:1076338/101‑1 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc            <  1:3443481/101‑2 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc            <  2:394976/101‑2 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTCAGGCCGGTGGTCGCTCCCCCCCCGGGGGCGTGGATCGAAcgacc           >  1:3131705/1‑96 (MQ=0)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAcc           >  1:3511552/1‑99 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAcc           >  1:2890673/1‑99 (MQ=1)             CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGACGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAcc           >  1:566111/1‑99 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC          >  1:535910/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC          >  1:416133/1‑101 (MQ=1)               ccCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCg         <  2:3645967/99‑2 (MQ=1)               ccCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCg         <  2:3285940/99‑2 (MQ=1)               CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCg         <  1:4326623/101‑2 (MQ=1)               CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCg         >  1:4012192/1‑100 (MQ=1)               CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCg         >  2:2501011/1‑100 (MQ=1)               CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCg         >  1:1627564/1‑100 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCgg        >  1:732437/1‑99 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCgg        >  2:129795/1‑99 (MQ=1)                TCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCgg        >  2:4592278/1‑99 (MQ=0)                TCCCCCCGCGGGGGCGTGGATAGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCgg        >  1:2642608/1‑99 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggc       >  2:3881684/1‑98 (MQ=1)                 CCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggc       >  2:2781279/1‑98 (MQ=1)                 CCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggc       >  2:2698902/1‑98 (MQ=1)                 CCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggc       >  1:4333310/1‑98 (MQ=1)                 CCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggc       <  1:4104686/101‑4 (MQ=1)                  CCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggcg      <  1:3368537/101‑5 (MQ=1)                  CCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggcg      >  1:1403224/1‑97 (MQ=1)                    CCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggcgcc    >  2:1878752/1‑95 (MQ=0)                     CCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggcgccg   <  2:1868317/101‑8 (MQ=0)                     CCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggcgccg   <  1:3249901/101‑8 (MQ=0)                     CCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggcgccg   <  1:1029870/101‑8 (MQ=0)                     CCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggcgccc   >  1:2768590/1‑94 (MQ=0)                     CCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAAAACCCGATCAT   <  2:3384670/101‑1 (MQ=1)                      CGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCggcgccgc  <  1:948913/101‑9 (MQ=0)                                             |||||||||||||||||||||||||||||||||                                              CCAGACGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTC..............................................................................  >  NC_014034/1397358‑1397401 .............................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATG  >  NC_014034/1397499‑1397543 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG