New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1397532	226 (1.440)	36 (0.230)	2/132	30.7	0.16	coding (1414/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1398037 =	155 (0.650)					intergenic (+341/+1557)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

CCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.........................................................................  >  NC_014034/1397487‑1397532 ................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGTAAGCGGTGCA  >  NC_014034/1398037‑1398075                                               ||||||||||||||||||||||||||||||||||                                        gtggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCG                    >  2:1707213/11‑101 (MQ=0)  tggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGg                   >  1:911059/10‑100 (MQ=0)  tggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGT                   >  2:2154620/10‑101 (MQ=0)   ggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTG                  >  1:4405421/9‑101 (MQ=0)   ggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTG                  >  2:2988851/9‑101 (MQ=0)   ggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGCCGCTCCCCCCGCGGGGGCGTG                  <  1:3438958/93‑1 (MQ=0)    gatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGG                 >  1:2302473/8‑101 (MQ=0)     gtcccgCCGGTCGCTCCCGCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGA                <  1:1603174/95‑1 (MQ=0)     atcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGA                >  1:1601526/7‑101 (MQ=0)     atcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGA                >  2:240526/7‑101 (MQ=0)      tcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGAT               <  1:2154770/96‑1 (MQ=1)        ccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCG             <  2:2653565/98‑1 (MQ=1)        ccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCG             <  1:1881713/98‑1 (MQ=1)         cgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGa            >  2:3724353/3‑100 (MQ=1)          gCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGaa           <  1:1034456/100‑3 (MQ=1)           CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA          <  2:3071136/101‑1 (MQ=1)           CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA          <  1:4353667/101‑1 (MQ=1)           CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA          <  1:1034040/101‑1 (MQ=1)           CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA          >  1:3243559/1‑101 (MQ=1)           CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA          <  1:1806798/101‑1 (MQ=1)           CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA          <  1:264612/101‑1 (MQ=1)            CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGTGGGCGTGGATCGAAAc         <  1:4486819/101‑2 (MQ=1)            CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc         <  1:3897068/101‑2 (MQ=1)            CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc         >  1:1380751/1‑100 (MQ=1)            CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc         >  2:2026198/1‑100 (MQ=1)            CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc         <  1:1883622/101‑2 (MQ=1)             GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcg        >  1:394476/1‑99 (MQ=1)             GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcg        >  1:1834991/1‑99 (MQ=1)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcggcgt    <  2:579777/101‑7 (MQ=1)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcggcgt    >  2:2296662/1‑95 (MQ=1)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcggcgt    >  2:1833530/1‑95 (MQ=1)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcggcgt    >  1:4491855/1‑95 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcggcgta   <  2:1915654/101‑8 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcggcgta   <  1:3299739/101‑8 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcggcgta   <  1:4246383/101‑8 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcggcgtag  >  2:3662002/1‑93 (MQ=0)                                               ||||||||||||||||||||||||||||||||||                                        CCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.........................................................................  >  NC_014034/1397487‑1397532 ................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGTAAGCGGTGCA  >  NC_014034/1398037‑1398075 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG