New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | = 1397532 | 226 (1.440) | 43 (0.270) | 11/132 | 22.0 | 0.28 | coding (1414/1578 nt) | RCAP_rcc01307 | hypothetical protein |
? | NC_014034 | 1434746 = | 0 (0.000) | intergenic (‑525/‑433) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator | |||||
Rejected: Position hash score below cutoff. |
CCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA............................................................................. > NC_014034/1397487‑1397532
................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAA > NC_014034/1434746‑1434788
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gtggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCG > 2:1707213/11‑101 (MQ=0)
tggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGg > 1:911059/10‑100 (MQ=0)
tggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGT > 2:2154620/10‑101 (MQ=0)
ggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTG > 1:4405421/9‑101 (MQ=0)
ggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTG > 2:2988851/9‑101 (MQ=0)
ggatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGCCGCTCCCCCCGCGGGGGCGTG < 1:3438958/93‑1 (MQ=0)
gatcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGG > 1:2302473/8‑101 (MQ=0)
gtcccgCCGGTCGCTCCCGCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGA < 1:1603174/95‑1 (MQ=0)
atcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGA > 2:240526/7‑101 (MQ=0)
atcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGA > 1:1601526/7‑101 (MQ=0)
tcccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGAT < 1:2154770/96‑1 (MQ=1)
ccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCG < 2:2653565/98‑1 (MQ=1)
ccgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCG < 1:1881713/98‑1 (MQ=1)
cgCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGA > 2:3724353/3‑101 (MQ=1)
gCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA < 1:1034456/100‑1 (MQ=1)
CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA < 1:1034040/101‑1 (MQ=1)
CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA < 1:4353667/101‑1 (MQ=1)
CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA < 1:1806798/101‑1 (MQ=1)
CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA > 1:3243559/1‑101 (MQ=1)
CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA < 1:264612/101‑1 (MQ=1)
CCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA < 2:3071136/101‑1 (MQ=1)
CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGTGGGCGTGGATCGAAAC < 1:4486819/101‑1 (MQ=1)
CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC < 1:3897068/101‑1 (MQ=1)
CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC > 1:1380751/1‑101 (MQ=1)
CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC < 1:1883622/101‑1 (MQ=1)
CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC > 2:2026198/1‑101 (MQ=1)
GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACG > 1:1834991/1‑101 (MQ=1)
GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACG > 1:394476/1‑101 (MQ=1)
GCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGt > 2:2296662/1‑100 (MQ=1)
GCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGt < 2:579777/101‑2 (MQ=1)
GCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGt > 2:1833530/1‑100 (MQ=1)
GCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGt > 1:4491855/1‑100 (MQ=1)
CTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGta < 2:1915654/101‑3 (MQ=1)
CTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGta < 1:4246383/101‑3 (MQ=1)
CTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGta < 1:3299739/101‑3 (MQ=1)
cCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGtag < 1:3486143/100‑4 (MQ=0)
cCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGtag < 1:103860/100‑4 (MQ=0)
TCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGtag > 2:3662002/1‑98 (MQ=0)
CCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGtaga > 1:3931295/1‑97 (MQ=0)
CCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGtaga < 1:2719672/101‑5 (MQ=0)
CCCCCCGCAGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGtaga > 2:4522955/1‑97 (MQ=0)
CCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGtagatc < 1:2253792/101‑7 (MQ=0)
CCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGCGtagatct < 1:2546810/101‑8 (MQ=0)
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CCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA............................................................................. > NC_014034/1397487‑1397532
................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAA > NC_014034/1434746‑1434788
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|