New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1420015	302 (1.270)	4 (0.020)	4/164	32.5	0.01	coding (310/1644 nt)	RCAP_rcc01323	IS66 family transposase
	?	NC_014034	1420019 =	252 (1.060)					coding (306/1644 nt)	RCAP_rcc01323	IS66 family transposase
Rejected: Position hash score below cutoff.

CCCCGCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTG.................................................................................  >  NC_014034/1419916‑1420015 ....................................................................................................CTCCTCCTCCTCCTCCTCGACATCGTCGTCGGGCACGTCATCCTCGTCGTCGTCCGCTCCCAGGAAATTGTTGTCGGAGCT  >  NC_014034/1420019‑1420099                                                                                                                                                                                       CCCCGCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGC                                                                                  >  1:1183966/1‑101 (MQ=255) CCCCGCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGC                                                                                  >  2:4223362/1‑101 (MQ=255) CCCCGCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGC                                                                                  >  2:1191599/1‑101 (MQ=255) CCCCGCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGC                                                                                  <  1:275631/101‑1 (MQ=255)    CGCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTTTGCTCC                                                                               >  1:1958739/1‑101 (MQ=255)    CGCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCC                                                                               >  1:4552769/1‑101 (MQ=255)    CGCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCC                                                                               >  2:3947970/1‑101 (MQ=255)    CGCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCC                                                                               >  2:2563686/1‑101 (MQ=255)     GCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCT                                                                              >  2:3053448/1‑101 (MQ=255)     GCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCT                                                                              >  1:657218/1‑101 (MQ=255)     GCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCT                                                                              >  2:1555162/1‑101 (MQ=255)      CAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTC                                                                             <  1:1987783/101‑1 (MQ=255)      CAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTC                                                                             >  2:2888773/1‑101 (MQ=255)      CAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTC                                                                             >  2:3081645/1‑101 (MQ=255)       AGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGTTTCCCTTTCCGGGGCTTCTGCTCCTCC                                                                            >  2:4582424/1‑101 (MQ=255)       AGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCC                                                                            >  2:4392684/1‑101 (MQ=255)       AGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCC                                                                            >  1:123662/1‑101 (MQ=255)       AGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCC                                                                            <  1:139224/101‑1 (MQ=255)       AGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCC                                                                            <  1:1643636/101‑1 (MQ=255)       AGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCC                                                                            >  2:2449674/1‑101 (MQ=255)       AGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCC                                                                            >  2:2745061/1‑101 (MQ=255)       AGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCC                                                                            <  1:3001470/101‑1 (MQ=255)       AGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCC                                                                            >  1:1694768/1‑101 (MQ=255)        GGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCT                                                                           <  1:77590/101‑1 (MQ=255)         tcttccgatcTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTC                                                                          <  2:3289796/91‑1 (MQ=255)         GAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTC                                                                          >  2:849868/1‑101 (MQ=255)         GAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTC                                                                          >  2:4540803/1‑101 (MQ=255)          AGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCC                                                                         >  1:4251594/1‑101 (MQ=255)          AGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCC                                                                         <  1:3904242/101‑1 (MQ=255)          AGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCC                                                                         <  2:2832923/101‑1 (MQ=255)          AGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCC                                                                         >  2:1653435/1‑101 (MQ=255)           GCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCT                                                                        >  2:2077415/1‑101 (MQ=255)           GCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCT                                                                        >  1:3402439/1‑101 (MQ=255)            CAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTC                                                                       >  1:1667687/1‑101 (MQ=255)            CAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTC                                                                       >  1:956903/1‑101 (MQ=255)            CAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTC                                                                       >  1:959694/1‑101 (MQ=255)            CAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTC                                                                       >  1:3510986/1‑101 (MQ=255)            CAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTC                                                                       <  2:3351836/101‑1 (MQ=255)             AGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCC                                                                      >  2:2940747/1‑101 (MQ=255)             AGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCC                                                                      >  2:2796282/1‑101 (MQ=255)             AGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCC                                                                      >  1:3510047/1‑101 (MQ=255)             AGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCC                                                                      >  2:4413480/1‑101 (MQ=255)              GTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCc                                                                     >  2:4507708/1‑100 (MQ=255)              GTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCT                                                                     <  1:4440246/101‑1 (MQ=255)               TGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTC                                                                    >  1:3296366/1‑101 (MQ=255)               TGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCGCCTCCTC                                                                    <  2:951829/101‑1 (MQ=255)                GCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCC                                                                   >  1:3502673/1‑101 (MQ=255)                GCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCC                                                                   >  1:4189750/1‑101 (MQ=255)                GCGGTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCGTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCC                                                                   <  1:1128895/101‑1 (MQ=255)                 CGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCCT                                                                  <  1:810085/101‑1 (MQ=255)                 CGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCCT                                                                  >  1:592864/1‑101 (MQ=255)                 CGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCCT                                                                  <  1:396139/101‑1 (MQ=255)                  GTTTCCTCGGGGAAATGCTTGTACCCCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCCTC                                                                 <  2:874665/101‑1 (MQ=255)                  GTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCCTC                                                                 <  2:1605807/101‑1 (MQ=255)                  GTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCCTC                                                                 >  1:2570387/1‑101 (MQ=255)                                     TGTACACCTCGGGCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCCTCGACATCGTCGTCGGGCACG                                              >  1:2529589/1‑101 (MQ=255)                                                       atcTCTTTGGTCGCTTCTGTTTCTTCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCCTCGACATCGTCGTCGGGCACGTCATCCGCGTCGTCGTCC                            <  2:1970243/98‑1 (MQ=255)                                                           CTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCCTCGACATCGTCGTCGGGCACGTCATCCTCGTCGTCGTCCagat                        >  1:1970378/1‑97 (MQ=255)                                                                                 TTCCCTTTCCGGGGCTTCTGCTCCTCCTCCTCCTCCTCGACATCGTCGTCGGGCACGTCATCCTCGTCGTCGTCCGCTCCCAGGAAATTGTTGTCGGAGCT  >  1:6969/1‑101 (MQ=255)                                                                                                                                                                                       CCCCGCAGGAGCAGTGCGTTTCCTCGGGGAAATGCTTGTACACCTCGGTCTTGATGTTCTTTGGTCGCTTCTGTTTCTGCTTCCCTTTCCGGGGCTTCTG.................................................................................  >  NC_014034/1419916‑1420015 ....................................................................................................CTCCTCCTCCTCCTCCTCGACATCGTCGTCGGGCACGTCATCCTCGTCGTCGTCCGCTCCCAGGAAATTGTTGTCGGAGCT  >  NC_014034/1420019‑1420099 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG