New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 144516231 (1.020)2 (0.010) 2/190 37.8 0.01 coding (667/1494 nt) phoA alkaline phosphatase
?NC_014034 3683125 = 253 (1.070)coding (815/1263 nt) gabT2 4‑aminobutyrate aminotransferase
Rejected: Position hash score below cutoff.

ATCCCTCGAAGATGCCCGAGGGCTGCACGCAAAAGGACATCGCCGCCCAGCTGATCGACCAGATCAAGGCCGGGGTGATCGACGTGGCGATGGGCGGCGGCCGGG....................................................................................................  >  NC_014034/144412‑144516
....................................................................................................CCGGGTGGCCATTGCCCATCGGCTTGCCCAGGGTCACCACATCGGGGGCAAAGCCGAGGAAGTCATGCCCCCACCAATGCGTGCCCACCCGGCCGAAGCCCGGCT  >  NC_014034/3683125‑3683224
                                                                                                                                                                                                             
                                    ACATCGCCGCCCAGCTGATCGACCAGATCAAGGCCGGGGTGATCGACGTGGCGATGGGCGGCGGCCGGGTGGCCATTGCCCATCGGCTTGCCCAGGGGCAC                                                                      >  2:273541/1‑101 (MQ=255)
                                                           CAGATCAAGGCCGGGGTGATCGACGTGGCGATGGGCGGCGGCCGGGTGGCCATTGCCCATCGGCTTGCCCAGGGTCACCACATCGGGGGCAAAGCCGAGGA                                               <  1:273573/101‑1 (MQ=255)
                                                                                                                                                                                                             
ATCCCTCGAAGATGCCCGAGGGCTGCACGCAAAAGGACATCGCCGCCCAGCTGATCGACCAGATCAAGGCCGGGGTGATCGACGTGGCGATGGGCGGCGGCCGGG....................................................................................................  >  NC_014034/144412‑144516
....................................................................................................CCGGGTGGCCATTGCCCATCGGCTTGCCCAGGGTCACCACATCGGGGGCAAAGCCGAGGAAGTCATGCCCCCACCAATGCGTGCCCACCCGGCCGAAGCCCGGCT  >  NC_014034/3683125‑3683224

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG