New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1473433 =	204 (0.860)	4 (0.020)	2/198	38.6	0.02	intergenic (+140/+79)	nadE/RCAP_rcc01367	NAD(+) synthase (glutamine‑hydrolyzing)/hypothetical protein
	?	NC_014034	3281628 =	176 (0.740)					intergenic (+81/+161)	RCAP_rcc03088/RCAP_rcc03089	flavin reductase domain‑containing protein/group 1 glycosyl transferase
Rejected: Position hash score below cutoff.

AGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.C....................................................................................................  <  NC_014034/1473532‑1473433 .....................................................................................................CCCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCCCG  >  NC_014034/3281628‑3281727                                                                                                                                                                                                           AGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CC                                                                                                     >  1:2158417/1‑101 (MQ=1) AGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CC                                                                                                     >  2:1529665/1‑101 (MQ=1) AGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CC                                                                                                     >  2:4297112/1‑101 (MQ=1)                                                                                          gcgCAAAGGCGCCCCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTT             <  2:918148/98‑1 (MQ=255)                                                                                                    gCCCCGGCCGGCCCCCGCCCCGCCCAGGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCCC   <  1:3387977/100‑1 (MQ=255)                                                                                                    gCCCCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCCC   <  2:2857063/100‑1 (MQ=17)                                                                                                     CCCCGCCCAGCCCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCCCG  <  1:2545579/101‑1 (MQ=12)                                                                                                                                                                                                           AGGCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.C....................................................................................................  <  NC_014034/1473532‑1473433 .....................................................................................................CCCGGCCAGCGCCCGCCCCGCCCATGGCGGGCGCTTCTCGCCCGCCGGGACGGGCGCCGGCCTCTGGTCCGCTTGCGGCAAACGGTCTTGGCCCGGCCCG  >  NC_014034/3281628‑3281727 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG