New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 159097 =NA (NA)2 (0.010) 2/198 38.6 0.02 coding (671/1176 nt) tuf1 translation elongation factor Tu
?NC_014034 = 2492689 240 (1.010)coding (732/1275 nt) cycH cytochrome c‑type biogenesis protein CycH
Rejected: Position hash score below cutoff.

TCGACGCCGGTGCAGACCGACTTCTTGGTGTCGCGGATGCCGACGATTTCAAGTTCGTCGCCCACGTTGATCACACCGCGTTCCACACGGCCGGTCACCA............................................................  <  NC_014034/159196‑159097
.....................................................................................................CCCGCCCGCGGCAATGGTCATCAGCTCGCCCAGACGGGTGTAATCCGCCGCCTCGGCCC  <  NC_014034/2492689‑2492631
                                                                                                                                                                
TCGACGCCGGTGCAGACCGACTTCTTGGTGTCGCGGATGCCGACGATTTCAAGTTCGTCGCCCACGTTGATCACACCGCGTTCCACACGGCCGGTCACCA.C                                                            <  1:1731447/101‑1 (MQ=255)
TCGACGCCGGTGCAGACCGACTTCTTGGTGTCGCGGATGCCGACGATTTCAAGTTCGTCGCCCACGTTGATCACACCGCGTTCCACACGGCCGGTCACCA.C                                                            >  1:550488/1‑101 (MQ=255)
TCGACGCCGGTGCAGACCGACTTCTTGGTGTCGCGGATGCCGACGATTTCAAGTTCGTCGCCCACGTTGATCACACCGCGTTCCACACGGCCGGTCACCA.C                                                            >  1:697640/1‑101 (MQ=255)
TCGACGCCGGTGCAGACCGACTTCTTGGTGTCGCGGATGCCGACGATTTCAAGTTCGTCGCCCACGTTGATCACACCGCGTTCCACACGGCCGGTCACCA.C                                                            <  2:2010525/101‑1 (MQ=255)
TCGACGCCGGTGCAGACCGACTTCTTGGTGTCGCGGATGCCGACGATTTCAAGTTCGTCGCCCACGTTGATCACACCGCGTTCCACACGGCCGGTCACCA.C                                                            >  2:2320845/1‑101 (MQ=255)
TCGACGCCGGTGCAGACCGACTTCTTGGTGTCGCGGATGCCGACGATTTCAAGTTCGTCGCCCACGTTGATCACACCGCGTTCCACACGGCCGGTCACCA.C                                                            >  2:2575896/1‑101 (MQ=255)
                                                      gatctGCCCACGTTGATCACACCGCGTTCCACACGGCCGGTCACCAGCCCGCCCGCGGCAATGGTCATCAGCTCGCCCAGACGGGTGTAATCCGCCGCCTC       <  1:3598041/96‑1 (MQ=255)
                                                           GCCCACGTTGATCACACCGCGTTCCACACGGCCGGTCACCAGCCCGCCCGCGGCAATGGTCATCAGCTCGCCCAGACGGGTGTAATCCGCCGCCTCagatc  >  2:3597773/1‑96 (MQ=255)
                                                                                                                                                                
TCGACGCCGGTGCAGACCGACTTCTTGGTGTCGCGGATGCCGACGATTTCAAGTTCGTCGCCCACGTTGATCACACCGCGTTCCACACGGCCGGTCACCA............................................................  <  NC_014034/159196‑159097
.....................................................................................................CCCGCCCGCGGCAATGGTCATCAGCTCGCCCAGACGGGTGTAATCCGCCGCCTCGGCCC  <  NC_014034/2492689‑2492631

Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG