New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	86 (0.390)	25 (0.110)	4/184	34.7	0.17	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	= 1729761	156 (0.660)					intergenic (+135/+18)	RCAP_rcc01597/tpiA	AsnC/Lrp family transcriptional regulator/triose‑phosphate isomerase
Rejected: Position hash score below cutoff.

CCCGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC...................................................................................................  <  NC_014034/1640113‑1640006 ....................................................................................................GGGGGCGCTGCCCCCAGACCCCCGGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCGCGAGGCC  <  NC_014034/1729761‑1729663                                                                                                                                                                                                                          CGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG                                                                                                   <  2:3318101/101‑1 (MQ=1)          CGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG                                                                                                   <  2:1192324/101‑1 (MQ=1)           GATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGC                                                                                                  <  1:325783/101‑1 (MQ=1)            ATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGGGCGGCC                                                                                                 >  1:1973800/1‑101 (MQ=0)             TCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCC                                                                                                <  1:2811728/101‑1 (MQ=1)              CTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGGGGGGCCCC                                                                                               >  1:1775819/1‑101 (MQ=0)                CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  1:1753373/101‑2 (MQ=1)                CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  1:2394281/101‑2 (MQ=1)                CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  2:4586190/101‑2 (MQ=1)                CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  1:2907105/101‑2 (MQ=1)                CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  1:3827010/101‑2 (MQ=1)                CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  2:112525/101‑2 (MQ=1)                CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  1:733607/101‑2 (MQ=1)                CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCc                                                                                             <  1:991799/101‑2 (MQ=1)                 GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGGGGGGCCCCCcc                                                                                            >  1:2944500/1‑99 (MQ=0)                 GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcg                                                                                            <  2:938051/101‑3 (MQ=1)                 GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcg                                                                                            <  1:2995333/101‑3 (MQ=1)                   CCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcggg                                                                                          <  2:2302728/101‑5 (MQ=1)                     CTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcc                                                                                        <  1:483894/101‑7 (MQ=1)                     CTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcc                                                                                        <  2:4437627/101‑7 (MQ=1)                      TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggccc                                                                                       <  2:1400708/101‑8 (MQ=1)                       GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcccc                                                                                      <  1:804821/101‑9 (MQ=1)                        TTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggccccc                                                                                     <  1:2475538/101‑10 (MQ=1)                         TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcccccc                                                                                    <  1:2626144/101‑11 (MQ=1)                         TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCcgggcccccc                                                                                    <  1:1210783/101‑11 (MQ=1)                                                                                                                                                                                                                 CCCGACAGGCGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC...................................................................................................  <  NC_014034/1640113‑1640006 ....................................................................................................GGGGGCGCTGCCCCCAGACCCCCGGGATATTTGGAGCAAGATGAAATCAGCTCCGGTTGTTTTTCATCTTGCTCCAAATATCCCGGGGGGTGAATGGCCGCGAGGCC  <  NC_014034/1729761‑1729663 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG