New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	44 (0.210)	49 (0.230)	16/178	24.4	0.33	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	= 1751815	151 (0.640)					intergenic (+144/‑214)	RCAP_rcc01619/aldB	Fis family transcriptional regulator/aldehyde dehydrogenase
Rejected: Position hash score below cutoff.

CGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC...............................................  <  NC_014034/1640104‑1640006 ..............................................................................................................CCCCCCGGGATATTTGGGGCAAGGTGAAAGGCGGAA  <  NC_014034/1751815‑1751780                                                                                                    |||||||||||                                     CGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG                                               <  2:3318101/101‑1 (MQ=1) CGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTG                                               <  2:1192324/101‑1 (MQ=1)  GATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGC                                              <  1:325783/101‑1 (MQ=1)   ATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGGGCGGCC                                             >  1:1973800/1‑101 (MQ=0)    TCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCC                                            <  1:2811728/101‑1 (MQ=1)     CTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGGGGGGCCCC                                           >  1:1775819/1‑101 (MQ=0)       CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                         <  2:112525/101‑1 (MQ=1)       CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                         <  1:2907105/101‑1 (MQ=1)       CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                         <  1:2394281/101‑1 (MQ=1)       CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                         <  1:991799/101‑1 (MQ=1)       CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                         <  1:1753373/101‑1 (MQ=1)       CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                         <  2:4586190/101‑1 (MQ=1)       CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                         <  1:3827010/101‑1 (MQ=1)       CGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                         <  1:733607/101‑1 (MQ=1)        GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGGGGGGCCCCCCc                                        >  1:2944500/1‑100 (MQ=0)        GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCG                                        <  2:938051/101‑1 (MQ=1)        GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCG                                        <  1:2995333/101‑1 (MQ=1)          CCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGG                                      <  2:2302728/101‑1 (MQ=1)            CTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCC                                    <  2:4437627/101‑1 (MQ=1)            CTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCC                                    <  1:483894/101‑1 (MQ=1)             TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCC                                   <  2:1400708/101‑1 (MQ=1)              tTTGGCGATCAGGATTTTTTGAAACTTCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGGGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCC                                  <  1:1045882/100‑1 (MQ=0)              GTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCC                                  <  1:804821/101‑1 (MQ=1)               TTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGGGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCC                                 <  1:4478553/101‑1 (MQ=1)               TTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCC                                 <  1:2475538/101‑1 (MQ=1)                TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                                <  1:2626144/101‑1 (MQ=1)                TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                                <  1:1210783/101‑1 (MQ=1)                 GGCGATCAGGATCTTTTNAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                               <  2:892503/101‑1 (MQ=1)                 GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                               <  2:4353945/101‑1 (MQ=1)                 GGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCG                               <  1:4382835/101‑1 (MQ=1)                  GCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGG                              <  1:1907525/101‑1 (MQ=1)                   CGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGG                             <  1:3028055/101‑1 (MQ=1)                    GATCAGGATCTTTTGAAACATCGCGGTCTCCTTCCTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGA                            <  1:4002554/101‑1 (MQ=1)                     gTCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCACCGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                           <  2:3661330/100‑1 (MQ=1)                     ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                           <  1:1884789/101‑1 (MQ=1)                     ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                           <  2:2788189/101‑1 (MQ=1)                      TCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATA                          <  1:3437014/101‑1 (MQ=1)                       CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                         <  2:449998/101‑1 (MQ=1)                       CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                         <  2:645818/101‑1 (MQ=1)                       CAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATAT                         <  2:3511336/101‑1 (MQ=1)                        AGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATT                        <  1:695372/101‑1 (MQ=1)                        AGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATT                        <  2:2849596/101‑1 (MQ=1)                         GGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTT                       <  1:1182454/101‑1 (MQ=1)                             CTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCTGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGG                   <  2:3654005/101‑1 (MQ=1)                             CTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGG                   <  1:2541920/101‑1 (MQ=1)                               TTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCA                 <  1:1549628/101‑1 (MQ=1)                                   AAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGGGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGat             <  1:1897689/101‑3 (MQ=1)                                   AAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGat             <  1:1349631/101‑3 (MQ=1)                                    AACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG            <  2:4469830/101‑1 (MQ=1)                                    AACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG            <  1:3058043/101‑1 (MQ=1)                                    AACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG            <  2:3897908/101‑1 (MQ=1)                                     ACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGA           <  2:3796993/101‑1 (MQ=1)                                     ACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGA           <  2:3558206/101‑1 (MQ=1)                                     ACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGA           <  2:3346597/101‑1 (MQ=1)                                     ACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGA           <  1:3649654/101‑1 (MQ=1)                                      CATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCCGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAA          <  2:976288/101‑1 (MQ=1)                                       ATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAA         <  1:444767/101‑1 (MQ=1)                                        TCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGCGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAG        <  2:4028967/101‑1 (MQ=1)                                         CGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGG       <  1:3621634/101‑1 (MQ=1)                                         CGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGG       <  1:2002142/101‑1 (MQ=1)                                         CGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGG       <  1:1338230/101‑1 (MQ=1)                                         CGCGGTCTCCTGCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGG       <  2:1603274/101‑1 (MQ=1)                                           CGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGga     <  1:83676/101‑3 (MQ=11)                                           CGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGga     <  1:3846642/101‑3 (MQ=11)                                            GGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGgat    <  2:2914303/101‑4 (MQ=31)                                            GGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGgat    <  1:2122948/101‑4 (MQ=31)                                              TCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGgatgg  <  1:2833371/101‑6 (MQ=33)                                                                                                    |||||||||||                                     CGATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC...............................................  <  NC_014034/1640104‑1640006 ..............................................................................................................CCCCCCGGGATATTTGGGGCAAGGTGAAAGGCGGAA  <  NC_014034/1751815‑1751780 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 38 ≤  ATCG