New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1640895 =246 (1.040)2 (0.010) 2/200 38.7 0.01 coding (831/1923 nt) mccA methylcrotonoyl‑CoA carboxylase subunit alpha
?NC_014034 1706297 = 182 (0.770)intergenic (‑119/+134) alr/dnaB alanine racemase/replicative DNA helicase
Rejected: Position hash score below cutoff.

ATGTTCGACCTGCAGGCGGGTGTTCATCTCCATGAACCAGAACCGGTCGGGCCGCAGCCCGTCCGAGGCATCG......................................................  <  NC_014034/1640967‑1640895
.........................................................................ACGGTCCCCCTTCACCCCGTCCGCAAGCGGACTCCCCGAGGTATTTCGGGCAAG  >  NC_014034/1706297‑1706350
                                                                                                                               
ATGTTCGACCTGCAGGCGGGTGTTCATCTCCATGAACCAGAACCGGTCGGGCCGCAGCCCGTCCGAGGCATCGACGGTCCCCCTTCACCCCGTCCGCAAGC                            >  1:4495573/1‑101 (MQ=255)
                          TCTCCATGAACCAGAACCGGTCGGGCCGCAGCCCGTCCGAGGCATCGACGGTCCCCCTTCACCCCGTCCGCAAGCGGACTCCCCGAGGTATTTCGGGCAAG  <  2:4495278/101‑1 (MQ=255)
                                                                                                                               
ATGTTCGACCTGCAGGCGGGTGTTCATCTCCATGAACCAGAACCGGTCGGGCCGCAGCCCGTCCGAGGCATCG......................................................  <  NC_014034/1640967‑1640895
.........................................................................ACGGTCCCCCTTCACCCCGTCCGCAAGCGGACTCCCCGAGGTATTTCGGGCAAG  >  NC_014034/1706297‑1706350

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG