New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1680884212 (0.890)2 (0.010) 2/196 38.4 0.01 coding (1083/3324 nt) RCAP_rcc01552 hypothetical protein
?NC_014034 1680893 = 217 (0.910)coding (1092/3324 nt) RCAP_rcc01552 hypothetical protein
Rejected: Position hash score below cutoff.

GAAACTGGCCTACCGGCCGCGCAGCGGCGTGGTGGAGATCACCCGGCTCGATCTGCAAAGCCGGGCCCTGCGGCTGGCGGCGACCGGGCAGGTGCGGCTG...................................  >  NC_014034/1680785‑1680884
....................................................................................................CGAAAAGGGCCTGCCGCGCGAGGCTCTGGCGCAGG  >  NC_014034/1680893‑1680927
                                                                                                                                       
GAAACTGGCCTACCGGCCGCGCAGCGGCGTGGTGGAGATCACCCGGCTCGATCTGCAAAGCCGGGCCCTGCGGCTGGCGGCGACCGGGCAGGTGCGGCTGC                                    <  1:1949951/101‑1 (MQ=255)
GAAACTGGCCTACCGGCCGCGCAGCGGCGTGGTGGAGATCACCCGGCTCGATCTGCAAAGCCGGGCCCTGCGGCTGGCGGCGACCGGGCAGGTGCGGCTGC                                    <  2:4083329/101‑1 (MQ=255)
                            GTGGTGGAGATCACCCGGCTCGATCTGCAAAGCCGGGCCCTGCGGCTGGCGGCGACCGGGCAGGTGCGGCTGCGAAAAGGGCCTGCCGCGCGAGGCTCTGG        >  1:3397691/1‑101 (MQ=255)
                                  GAGATCACCCGGCTCGATCTGCAAAGCCGGGCCCTGCGGCTGGCGGCGACCGGGCAGGTGCGGCTGCGAAAAGGGCCTGCCGCGCGAGGCTCTGGCGCAGG  <  2:3397438/101‑1 (MQ=255)
                                                                                                                                       
GAAACTGGCCTACCGGCCGCGCAGCGGCGTGGTGGAGATCACCCGGCTCGATCTGCAAAGCCGGGCCCTGCGGCTGGCGGCGACCGGGCAGGTGCGGCTG...................................  >  NC_014034/1680785‑1680884
....................................................................................................CGAAAAGGGCCTGCCGCGCGAGGCTCTGGCGCAGG  >  NC_014034/1680893‑1680927

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG