New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1723282 =	202 (0.870)	62 (0.270)	2/196	38.4	0.23	intergenic (‑537/+891)	infC/fpr	translation initiation factor IF/ferredoxin‑‑NADP reductase
	?	NC_014034	= 1723911	203 (0.850)					intergenic (‑1166/+262)	infC/fpr	translation initiation factor IF/ferredoxin‑‑NADP reductase
Rejected: Position hash score below cutoff.

CGGGGCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGGGCAGCTTCCGCAGCCGGGGCCTCGGCGGCCGGAGCTTCGACAGCCGGGGC....................................................................................................  <  NC_014034/1723383‑1723282 ....................................................................................................GCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCGGCT  <  NC_014034/1723911‑1723812                                                                                                                                                                                                                                                                     tcCCGCAGCCGGGGCTTCGGCGGCGGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCG                                              <  2:35456/99‑1 (MQ=12)                                                                           CGGCGGCGGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCG                             <  2:3711660/101‑1 (MQ=14)                                                                             GCGGCCGGCGGTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGC                           <  2:1429374/101‑1 (MQ=0)                                                                             GCGGCCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGC                           <  2:3154192/101‑1 (MQ=1)                                                                              CGGCCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCCGCTTCCGCAGCCGGGGCTTCAGCGGCC                          >  1:3709955/1‑101 (MQ=1)                                                                              CGGCCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCCGCC                          >  1:2902902/1‑101 (MQ=1)                                                                              CGGCCGGAGCTTCGACAGCCGGGGCAGCTCCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCC                          <  1:1338741/101‑1 (MQ=1)                                                                               GGCCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGGCG                         >  2:2039440/1‑101 (MQ=1)                                                                               GGCCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCG                         >  1:2544178/1‑101 (MQ=1)                                                                                GCCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGG                        <  1:4417640/101‑1 (MQ=1)                                                                                GCCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGG                        >  1:3047293/1‑101 (MQ=1)                                                                                 gCGGAGCTGCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGA                       <  2:3912601/100‑1 (MQ=11)                                                                                 CCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGA                       <  1:2085103/101‑1 (MQ=11)                                                                                 CCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGA                       >  1:2060569/1‑101 (MQ=11)                                                                                  CGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGGCGGAGCAGCTTCCCCAGCCGGGGCTTCAGCGCCCGGAG                      >  2:3937110/1‑101 (MQ=2)                                                                                  CGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCCGCGGCCGGAG                      >  2:4356939/1‑101 (MQ=11)                                                                                  CGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAG                      <  2:3747762/101‑1 (MQ=11)                                                                                  CGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAG                      >  1:3067523/1‑101 (MQ=11)                                                                                  CGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAG                      >  1:2045509/1‑101 (MQ=11)                                                                                  CGGAGCTTCGACAGCCGGGCCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAG                      <  2:4606075/101‑1 (MQ=11)                                                                                   GGAGCTTGGCCAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC                     <  1:2867296/101‑1 (MQ=0)                                                                                   GGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAac                     >  1:2167836/1‑99 (MQ=1)                                                                                   GGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGcgg                     >  2:664109/1‑98 (MQ=11)                                                                                   GGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC                     >  1:2861718/1‑101 (MQ=1)                                                                                    tAGCTTCGACAGCCGGGGCAGCTTCCCCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCT                    <  1:1413529/100‑1 (MQ=11)                                                                                    gcGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCT                    <  2:461341/99‑1 (MQ=11)                                                                                    GAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCT                    <  2:1902250/101‑1 (MQ=11)                                                                                    GAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCT                    <  2:865675/101‑1 (MQ=11)                                                                                    GAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCT                    <  1:1812792/101‑1 (MQ=11)                                                                                     tctTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTT                   <  2:1984784/98‑1 (MQ=14)                                                                                     agagTCGACAGCCGGGGCAGCTTCCGCAGCCGGTGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTT                   <  2:2902686/97‑1 (MQ=9)                                                                                     acCTTCGCCAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTT                   <  2:1052034/99‑1 (MQ=14)                                                                                     AGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTT                   <  2:424530/101‑1 (MQ=31)                                                                                     AGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTT                   >  2:1660696/1‑101 (MQ=31)                                                                                     AGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTACGCAGACGGGGCTTCAGCGGCCGGAGCTa                   >  2:1413434/1‑100 (MQ=2)                                                                                      GCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTC                  >  1:3754612/1‑101 (MQ=32)                                                                                       CTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCG                 >  2:3975827/1‑101 (MQ=33)                                                                                        TTCGACAGCCGGGGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGCCAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGA                <  1:3364110/101‑1 (MQ=0)                                                                                        TTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGGGCTTAGA                >  1:1984919/1‑101 (MQ=9)                                                                                        TTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCACCCGGGGCTTCAGCGGCCGGACCTTCGA                >  1:2056169/1‑101 (MQ=12)                                                                                         gCGACAGCCGGGGCGGCTTCCGCAGCCGGGGCTGCAGCGGCCGGAGCCTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGAC               <  2:2428163/100‑1 (MQ=0)                                                                                         TCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGAC               <  2:280437/101‑1 (MQ=32)                                                                                         TCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGAC               <  2:2242178/101‑1 (MQ=32)                                                                                         TCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGAC               <  1:431445/101‑1 (MQ=32)                                                                                          CGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA              <  2:2333403/101‑1 (MQ=32)                                                                                          CGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA              <  1:3220808/101‑1 (MQ=32)                                                                                           gcCAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAG             <  1:2846685/99‑1 (MQ=17)                                                                                           GACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGGGCTTCGGCAG             >  2:3505115/1‑101 (MQ=12)                                                                                           GACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAG             >  1:461378/1‑101 (MQ=32)                                                                                             CAGCCGGGGCAGCTTCCGCAGGCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGGGCCTCGACAGCC           >  1:3438005/1‑101 (MQ=255)                                                                                             CAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCC           <  2:3035369/101‑1 (MQ=32)                                                                                             CAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCC           <  2:1630076/101‑1 (MQ=32)                                                                                             CAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCC           >  1:4333093/1‑101 (MQ=32)                                                                                              AGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGGGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCG          <  2:3825379/101‑1 (MQ=17)                                                                                              AGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCG          >  2:2930837/1‑101 (MQ=32)                                                                                              AGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCG          >  1:335732/1‑101 (MQ=32)                                                                                              AGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCG          >  1:785307/1‑101 (MQ=32)                                                                                               GCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACCGCCGG         >  1:2560091/1‑101 (MQ=17)                                                                                               GCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGG         <  2:1134335/101‑1 (MQ=32)                                                                                               GCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGG         >  1:1131313/1‑101 (MQ=32)                                                                                               GCCGGGGCAGCTCCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGG         <  1:2699147/101‑1 (MQ=17)                                                                                                   GGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCG     <  2:3507280/101‑1 (MQ=31)                                                                                                                                                                                                            CGGGGCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGGGCAGCTTCCGCAGCCGGGGCCTCGGCGGCCGGAGCTTCGACAGCCGGGGC....................................................................................................  <  NC_014034/1723383‑1723282 ....................................................................................................GCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCGGCT  <  NC_014034/1723911‑1723812 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 41 ≤  ATCG