New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1732870 =	28 (0.150)	31 (0.170)	12/154	24.2	0.51	intergenic (‑294/‑109)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
	?	NC_014034	= 2474937	32 (0.130)					intergenic (‑100/+26)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

CTGAACTGGGTCATCGGGCGCTCCTTTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCG.......................  <  NC_014034/1732992‑1732870 ....................................................................................................TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTGCGCCCCCC  <  NC_014034/2474937‑2474915                                                                                                                                                                             TTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACC                      >  1:3513829/1‑101 (MQ=1)                          TTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACC                      <  1:1937404/101‑1 (MQ=1)                           TGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCC                     >  2:191912/1‑101 (MQ=1)                           TGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCC                     >  2:3642540/1‑101 (MQ=1)                           TGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCC                     <  1:3628615/101‑1 (MQ=1)                            GGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCG                    <  1:781341/101‑1 (MQ=1)                            GGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCG                    <  1:4279851/101‑1 (MQ=1)                             GCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGC                   >  2:551788/1‑101 (MQ=1)                             GCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGC                   >  1:4432990/1‑101 (MQ=1)                                CGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACGCGCCGG                >  2:921582/1‑101 (MQ=0)                                  CGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGG              >  1:2350940/1‑101 (MQ=1)                                    TTTGGCAGCCCGGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGC            <  2:1340486/101‑1 (MQ=0)                                    TTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGC            <  2:2808326/101‑1 (MQ=1)                                     TTAGCAGGGCGGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT           <  1:1484245/101‑1 (MQ=0)                                     TTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT           >  2:1319985/1‑101 (MQ=1)                                      TAGCAGGGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTt          <  1:766360/101‑2 (MQ=11)                                      TAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTt          <  1:1487046/101‑2 (MQ=11)                                        ggAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTtca        <  1:955394/99‑4 (MQ=14)                                        GCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGgcgcc        >  1:3673693/1‑96 (MQ=1)                                        GCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTtca        <  2:1276947/101‑4 (MQ=14)                                         CAGGGCGGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTtcac       <  1:4472592/101‑5 (MQ=9)                                         CAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTtcac       >  1:1697777/1‑97 (MQ=14)                                         CAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCCGCac       <  2:3951262/101‑3 (MQ=1)                                         CAGCGCCGGCCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTtcac       <  2:987613/101‑5 (MQ=14)                                          AGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTtcacc      >  2:3806115/1‑96 (MQ=14)                                          AGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCCGGGGGggtcgcc      >  1:4162805/1‑94 (MQ=2)                                           GCGCGGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCC     <  1:3355580/101‑1 (MQ=12)                                            CGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCCCGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCC    <  1:2240220/101‑1 (MQ=12)                                             cCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCC   <  2:1492929/100‑1 (MQ=17)                                             GCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGGTTCCCCCCC   >  1:3694868/1‑101 (MQ=12)                                             GCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCC   <  2:1473257/101‑1 (MQ=17)                                             GCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCC   <  2:2282214/101‑1 (MQ=17)                                              cgGGGCGGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCC  <  1:4429828/99‑1 (MQ=12)                                              CCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCAGGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCC  <  1:1171363/101‑1 (MQ=12)                                                                                                                                                    CTGAACTGGGTCATCGGGCGCTCCTTTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCG.......................  <  NC_014034/1732992‑1732870 ....................................................................................................TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTGCGCCCCCC  <  NC_014034/2474937‑2474915 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG