New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1788300 =132 (0.610)3 (0.010) 2/182 36.9 0.02 coding (737/747 nt) RCAP_rcc01651 ABC transporter ATP‑binding protein
?NC_014034 2603837 = 220 (0.930)intergenic (+15/‑121) RCAP_rcc02427/RCAP_rcc02428 M23 family peptidase/TrkA domain transport protein
Rejected: Position hash score below cutoff.

CGGATGACATGGTGCTGTTGCATCGCGGCCGCGTCGCCGCCGCGGGCGCGGTCGGGGCGCTTCGGGGCGCCACCCCCCTGCCCGACTGGTTCCTGGCCCGGACCGGGGC..................................................................................................  <  NC_014034/1788408‑1788300
....................................................................................................GACCGGGGCGCCGGCCGCGAAAAGGGGGCTTTGGCCCCCTTTTTCCATCCGGTAACAAGAACTTGACCTCTCTGGCCGGGAAGCGCAATTTGCCGTGGGGGCGAGGA  >  NC_014034/2603837‑2603934
                                                                                                                                                                                                               
             GCTGTTGCATCGCGGCCGCGTCGCCGCCGCGGGCGCGGTCGGGGCGCTTCGGGGCGCCACCCCCCTGCCCGACTGGCTCCTTGCCCGGACCGGGGCCCCGG                                                                                               >  2:2032456/1‑101 (MQ=255)
                                                    CGGGGCGCTTCGGGGCGCCACCCCCCTGCCCGACTGGTTCCTGGCCCGGACCGGGGCGCCGGCCGCGAAAAGGGGGCTTTGGCTCCCTTTTTCCATCCGGa                                                        >  2:3982086/1‑100 (MQ=255)
                                                          GCTTCGGGGCGCCCCCCCCCTGCCCGACTGGTTCCTGCCCCGGACCGGGGCGCCGGCCGCGAAAAGGGGGCTTTGGCCCCCTTTTTCCATCCGGTAACAAG                                                  <  1:3982371/101‑1 (MQ=255)
                                                                                                                                                                                                               
CGGATGACATGGTGCTGTTGCATCGCGGCCGCGTCGCCGCCGCGGGCGCGGTCGGGGCGCTTCGGGGCGCCACCCCCCTGCCCGACTGGTTCCTGGCCCGGACCGGGGC..................................................................................................  <  NC_014034/1788408‑1788300
....................................................................................................GACCGGGGCGCCGGCCGCGAAAAGGGGGCTTTGGCCCCCTTTTTCCATCCGGTAACAAGAACTTGACCTCTCTGGCCGGGAAGCGCAATTTGCCGTGGGGGCGAGGA  >  NC_014034/2603837‑2603934

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 15 ≤  ATCG  < 21 ≤  ATCG  < 36 ≤  ATCG