New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1936433 =202 (0.920)2 (0.010) 2/184 37.1 0.01 coding (232/468 nt) RCAP_rcc01793 cinA domain‑containing protein
?NC_014034 2949058 = 177 (0.750)coding (88/600 nt) recR recombination protein RecR
Rejected: Position hash score below cutoff.

TCGAACGCGGTTTCGTCACCTATTCGAACGCCGCCAAGGTCGAGATGCTGGGCGTTTCGGTCGAGACACTCGAGGCCTTTGGCGCGGTTTCCGAACAGGTGGCGCGCG...................................................................................................  <  NC_014034/1936540‑1936433
....................................................................................................GGCGCGCGGTGCTGCATCTTCTGCGCAAGCGCGAGGGGCAGATGGCGCCCCTTGCGGCGGCGCTGTCGCGGGTGGCCGAAACCGCCCGCGATTGCCCGATCTGCGGC  >  NC_014034/2949058‑2949156
                                                                                                                                                                                                               
                                    AGGTCGAGATGCTGGGCGTTTCGGTCGAGACACTCGAGGCCTTTGGCGCGGTTTCCGAACAGGTGGCGCGCGGTGCTGCATCTTCTGCGCAAGCGCGAGGG                                                                        >  1:4585856/1‑101 (MQ=255)
                                       TCGAGATGCTGGGCGTTTCGGTCGAGACACTCGAGGCCTTTGGCGCGGTTTCCGAACAGGTGGCGCGCGGTGCTGCATCTTCTGCGCAAGCGCGAGGGGCA                                                                     <  2:4585557/101‑1 (MQ=255)
                                                                                                                                                                                                               
TCGAACGCGGTTTCGTCACCTATTCGAACGCCGCCAAGGTCGAGATGCTGGGCGTTTCGGTCGAGACACTCGAGGCCTTTGGCGCGGTTTCCGAACAGGTGGCGCGCG...................................................................................................  <  NC_014034/1936540‑1936433
....................................................................................................GGCGCGCGGTGCTGCATCTTCTGCGCAAGCGCGAGGGGCAGATGGCGCCCCTTGCGGCGGCGCTGTCGCGGGTGGCCGAAACCGCCCGCGATTGCCCGATCTGCGGC  >  NC_014034/2949058‑2949156

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG