New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 2017020199 (0.920)2 (0.010) 2/182 36.9 0.01 coding (424/1350 nt) RCAP_rcc01863 hypothetical protein
?NC_014034 2707462 = 169 (0.710)coding (1127/3216 nt) RCAP_rcc02520 integrin alpha repeat/hemolysin‑type calcium‑binding repeat family protein
Rejected: Position hash score below cutoff.

AATCCGGGGTGGCGGTCGCGACGCTGGTGATGACAGCTTTGGTGCTGATCTTTTCCGAGGTGCTGCCGAAGACCTGGGCGATCACCAACCCCGAGACGGTGGCGGCGC....................................................................................................  >  NC_014034/2016913‑2017020
...................................................................................................TGGCGGCGCTCGACCCGAGCGAGGGCTTTGCGATCACCGGCGCGGGATCGAATGACGCCCTGGGCTGGGCGGTCTCGGCGGCGGGCGACGTGAACGGCGACGGGCTCGG  >  NC_014034/2707462‑2707561
                                                                                                                                                                                                                
                                                                       ctCTGGGCGATCACCAACCCCGAGACGGTGGCGGCGCTCGACCCGAGCGAGGGCTTTGCGATCACCGGCGCGGGATCGAATGACGCCCTGGGCTGGGCGGT                                      <  1:4477604/99‑1 (MQ=255)
                                                                         CTGGGCGATCACCAACCCCGAGACGGTGGCGGCGCTCGACCCGAGCGAGGGCTTTGCGATCACCGGCGCGGGATCGAATGACGCCCTGGGCTGGGCGGTag                                    >  2:4477309/1‑99 (MQ=255)
                                                                                                                                                                                                                
AATCCGGGGTGGCGGTCGCGACGCTGGTGATGACAGCTTTGGTGCTGATCTTTTCCGAGGTGCTGCCGAAGACCTGGGCGATCACCAACCCCGAGACGGTGGCGGCGC....................................................................................................  >  NC_014034/2016913‑2017020
...................................................................................................TGGCGGCGCTCGACCCGAGCGAGGGCTTTGCGATCACCGGCGCGGGATCGAATGACGCCCTGGGCTGGGCGGTCTCGGCGGCGGGCGACGTGAACGGCGACGGGCTCGG  >  NC_014034/2707462‑2707561

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG