New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2077033 =226 (0.980)3 (0.010) 3/194 36.9 0.01 coding (112/861 nt) RCAP_rcc01921 hypothetical protein
?NC_014034 2152180 = 222 (0.930)coding (2059/2880 nt) RCAP_rcc01996 phage membrane protein
Rejected: Position hash score below cutoff.

ACGGGTTCTTCATCGCCTCGCGCTTGAAGTTGTCGGCGATGTATTCGCCCATGTAGCGCGTGCCGATCCGGTAATCGACCGAGTAATGGAACCAGCCCGTGGG....................................................................................................  <  NC_014034/2077135‑2077033
....................................................................................................GGGCGCGACGCGCTGAAAGGGTTCTCGACGCAGATCAAAATCTCCACCCACGGGCTCTCCGACAGCGAGGCGCAAGAGGCGATCCGGGCGGGGTTCACGCAGC  >  NC_014034/2152180‑2152279
                                                                                                                                                                                                           
                                          ATTCGCCCATGTAGCGCGTGCCGATCCGGTAATCGACCGAGTAATGGAACCAGCCCGTGGGCGCGACGCGCTGAAAGGGTTCTCGACGCAGATCAAAATCT                                                              >  1:1533509/1‑101 (MQ=255)
                                                   TGTAGCGCGTGCCGATCCGGTAATCGACCGAGTAATGGAACCAGCCCGTGGGCGCGACGCGCTGAAAGGGTTCTCGACGCAGATCAAAATCTCCACCCACG                                                     <  2:1533402/101‑1 (MQ=255)
                                                                                              cgatcTGGGCGCGACGCGCTGAAAGGGTTCTCGACGCAGATCAAAATCTCCACCCACGGGCTCTCCGACAGCGAGGCGCAAGAGGCGATCCGGGCGGGGTT          <  1:3453335/96‑1 (MQ=255)
                                                                                                                                                                                                           
ACGGGTTCTTCATCGCCTCGCGCTTGAAGTTGTCGGCGATGTATTCGCCCATGTAGCGCGTGCCGATCCGGTAATCGACCGAGTAATGGAACCAGCCCGTGGG....................................................................................................  <  NC_014034/2077135‑2077033
....................................................................................................GGGCGCGACGCGCTGAAAGGGTTCTCGACGCAGATCAAAATCTCCACCCACGGGCTCTCCGACAGCGAGGCGCAAGAGGCGATCCGGGCGGGGTTCACGCAGC  >  NC_014034/2152180‑2152279

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG