New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2185845	55 (0.240)	34 (0.150)	20/194	23.8	0.42	intergenic (+118/‑387)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
	?	NC_014034	2330182 =	37 (0.160)					intergenic (+157/+155)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

CCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCC....................................................................................................  >  NC_014034/2185746‑2185845 ..................................................................................................CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCC  >  NC_014034/2330182‑2330281                                                                                                                                                                                                           CCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCC                                                                                                     <  1:3782910/101‑1 (MQ=11)     gACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCAC                                                                                                 <  2:1765710/100‑1 (MQ=21)       CAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCC                                                                                               <  1:3252886/101‑1 (MQ=35)         GGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCC                                                                                             <  2:2176261/101‑1 (MQ=35)         GGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCC                                                                                             <  2:1784012/101‑1 (MQ=35)            GGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGC                                                                                          <  1:2363493/101‑1 (MQ=37)             GCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCG                                                                                         <  1:601575/101‑1 (MQ=38)             GCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCCGCG                                                                                         >  1:519227/1‑101 (MQ=37)               CCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTA                                                                                       <  2:3271817/101‑1 (MQ=40)                CCGCTCCCCCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAT                                                                                      <  1:4456021/101‑1 (MQ=255)                 CGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTTTT                                                                                     <  1:1749015/101‑1 (MQ=255)                 CGCCCCCCCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATT                                                                                     <  1:1749016/101‑1 (MQ=255)                  GCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCCGCGGATTT                                                                                    >  1:3177367/1‑101 (MQ=255)                      CCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatcc                                                                                >  2:4238734/1‑97 (MQ=255)                         CCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatcccaa                                                                             <  1:1778061/101‑8 (MQ=255)                            GGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGAA                                                                          <  2:3924496/101‑1 (MQ=255)                               CGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGAAAAA                                                                       <  1:814826/101‑1 (MQ=255)                                GGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGAAAAAG                                                                      <  1:544237/101‑1 (MQ=255)                                GGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGAAAAAG                                                                      <  2:3119799/101‑1 (MQ=255)                                                                           cGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGG                            >  2:2632105/2‑101 (MQ=32)                                                                                 cccggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTT                      <  1:3718135/96‑1 (MQ=32)                                                                                  ccggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                     <  1:2875266/97‑1 (MQ=32)                                                                                  ccggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTT                     <  1:2518352/97‑1 (MQ=32)                                                                                   cggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCTGCGGCCCGGGCGGCTTTC                    >  2:3074750/4‑101 (MQ=17)                                                                                   cggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTC                    >  1:3758313/4‑101 (MQ=32)                                                                                   cggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTC                    <  1:3239118/98‑1 (MQ=32)                                                                                    ggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCc                   >  1:4283775/3‑100 (MQ=14)                                                                                    ggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCc                   >  2:257759/3‑100 (MQ=14)                                                                                    ggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCA                   <  2:1012423/99‑1 (MQ=31)                                                                                       CGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCT                <  1:1219805/101‑1 (MQ=1)                                                                                         GGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGG              >  2:4474997/1‑101 (MQ=1)                                                                                          GGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGG             >  1:1616295/1‑101 (MQ=1)                                                                                              TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCA         <  1:2860669/101‑1 (MQ=1)                                                                                                 GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG      >  2:4313328/1‑101 (MQ=1)                                                                                                                                                                                                           CCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCC....................................................................................................  >  NC_014034/2185746‑2185845 ..................................................................................................CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCC  >  NC_014034/2330182‑2330281 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG