New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 21859784 (0.020)17 (0.070) 12/192 28.6 0.47 intergenic (+251/‑254) mtlK/RCAP_rcc02028 mannitol 2‑dehydrogenase/FeoA family protein
?NC_014034 2330300 = 35 (0.150)intergenic (+275/+37) RCAP_rcc02161/mrcA hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

AGCAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAACCG.CCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCC...................................................................................................  >  NC_014034/2185876‑2185978
.....................................................................................................GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTT  >  NC_014034/2330300‑2330398
                                                                                                                                                                                                            
    GCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC                                                                                                   >  1:1375967/1‑101 (MQ=0)
    GCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCC                                                                                                   <  1:3682239/101‑1 (MQ=0)
     CGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCCG                                                                                                  <  1:314406/101‑1 (MQ=0)
      GGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCCGG                                                                                                 >  1:4653522/1‑101 (MQ=0)
        CTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCCGGCG                                                                                               >  2:1270081/1‑101 (MQ=0)
         TTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCCGGCGG                                                                                              >  1:2738581/1‑101 (MQ=0)
          TGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCCGGCGGG                                                                                             >  1:3001391/1‑101 (MQ=255)
          TGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCCCCGGCGGG                                                                                             >  2:1105762/1‑101 (MQ=255)
                                                                  ctggggcCAAAGATCCCGGGGGTCC.GGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGG                                      <  2:3498500/94‑1 (MQ=37)
                                                                        cCAAAGATCCGGGGGGTCC.GGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGA                                <  2:2870567/100‑1 (MQ=2)
                                                                        cCAAAGATCCCGGGGGTCC.GGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGA                                <  2:651872/100‑1 (MQ=11)
                                                                          aaagacCCCGGGGGCCC.GGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAG                              <  1:1357193/95‑1 (MQ=0)
                                                                            agATCCCGGGGGTCC.GGGGGCGGTGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGT                            <  1:4255922/99‑1 (MQ=11)
                                                                               aCCCGGGGGTCCGGGGGGCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCG                          <  2:993567/100‑1 (MQ=2)
                                                                                CCCGGGGGTCC.GGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCC                        <  2:2229482/101‑1 (MQ=11)
                                                                                       ggCC.GGGGGCGGGCCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCG                 <  2:1616190/99‑1 (MQ=0)
                                                                                             GGGGCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATC            <  2:2137317/101‑1 (MQ=1)
                                                                                                                                                                                                            
AGCAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAACCG.CCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCC.GGGGGCGGAGCCC...................................................................................................  >  NC_014034/2185876‑2185978
.....................................................................................................GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTT  >  NC_014034/2330300‑2330398

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG