New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221943 =224 (1.000)0 (0.000) 2/188 37.5 0.00 coding (714/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222062 789 (3.320)coding (595/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ACG.......................................................................................................  <  NC_014034/221945‑221943
.........ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACC  <  NC_014034/222062‑221966
   ||||||                                                                                                 
ACGGACCCCACGGACCCGACCGATCCCACGGGCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC       <  1:2216112/101‑1 (MQ=0)
ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGCTCCCAC       >  1:2867469/1‑101 (MQ=0)
ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCAC       >  1:1435459/1‑101 (MQ=0)
ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCAC       >  1:3639332/1‑101 (MQ=0)
     CCCCACCGACCCGACCGAACCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc  <  2:4582381/101‑3 (MQ=0)
   ||||||                                                                                                 
ACG.......................................................................................................  <  NC_014034/221945‑221943
.........ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACC  <  NC_014034/222062‑221966

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG