New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =258 (1.250)26 (0.130) 18/174 22.8 0.10 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222128 215 (0.910)coding (529/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC...................................................................  <  NC_014034/222050‑221953
...............................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGAC  <  NC_014034/222128‑222075
                                                                                                  |||||||||||||                                                      
GATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATACGACCGATCCCACGGACCCGACCGATCCGACGGA                                                                  >  2:3019721/1‑101 (MQ=0)
     gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGc                                                             >  1:586132/2‑100 (MQ=12)
     gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                             >  1:125622/2‑101 (MQ=12)
       CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACC                                                           >  2:4485895/1‑101 (MQ=9)
        GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                          <  2:2874051/101‑1 (MQ=0)
         gacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                         >  2:284395/4‑101 (MQ=0)
          acCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGAc                                                        >  1:533978/3‑100 (MQ=0)
             CGACCCATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                                                     <  1:1060310/101‑1 (MQ=0)
              GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGACCCGACGGACCCGACCGATCCCA                                                    >  1:2889614/1‑101 (MQ=0)
               cCCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                   <  2:64008/100‑1 (MQ=0)
                 CGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGCCGGACCCGACCGATCCCACGc                                                 >  1:506428/1‑100 (MQ=0)
                  GATCCCACGGCCCCGACCGATCCCACGGACCCTACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGA                                                <  2:3990485/101‑1 (MQ=0)
                  GATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCCATCCCACGcc                                                >  1:3682748/1‑99 (MQ=0)
                         CGGCCCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACC                                         <  1:4092010/101‑1 (MQ=2)
                           GACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGA                                       <  2:533930/101‑1 (MQ=12)
                             CCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGAcc                                     >  1:1599715/1‑99 (MQ=2)
                              CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACCGACCCTACCGATCC                                    >  2:3550932/1‑101 (MQ=0)
                               CGACCGGTCCCACGGACCCGACCGATCCCAGGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                   <  1:2127287/101‑1 (MQ=0)
                               CGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGAGCCa                                   >  2:2636145/1‑100 (MQ=255)
                               CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGCCGGACCCGACCGATCCCACGGACCCGGCCGATCCC                                   >  1:377669/1‑101 (MQ=0)
                                  CCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATagatcg                                >  1:1258091/1‑95 (MQ=0)
                                          ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGATCCCAC                        >  2:3759784/1‑101 (MQ=0)
                                            GGACCCGACCGATCCCACGGACCGGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCG                      <  1:4383816/101‑1 (MQ=0)
                                                tccgatctTCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCC                  <  2:2654026/93‑1 (MQ=255)
                                                 CGACCGACCCCACGCACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCg                 <  1:4024958/101‑2 (MQ=255)
                                                  GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACAGATCCCACGGACACGACCGATCCCACGGATCCCACCGATCCga                >  1:278956/1‑99 (MQ=255)
                                                   cCCGATCCCACGGACCCGACCGTTCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGAC               <  2:3852805/100‑1 (MQ=0)
                                                    CCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACG              <  1:2671544/101‑1 (MQ=12)
                                                        TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCagatcgga          >  1:2654211/1‑93 (MQ=255)
                                                         CCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC         <  1:2474772/101‑1 (MQ=0)
                                                           CACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGATCCCACCGATCCGACGGACCCGc       >  1:2418842/1‑100 (MQ=255)
                                                             CGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGCCGGACCCGACc     >  1:2686170/1‑100 (MQ=0)
                                                                atCCGACGGACCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGAC  >  1:4129024/3‑101 (MQ=0)
                                                                                                  |||||||||||||                                                      
GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC...................................................................  <  NC_014034/222050‑221953
...............................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGAC  <  NC_014034/222128‑222075

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG