New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221956 =314 (1.340)13 (0.060) 8/192 31.7 0.02 coding (701/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222062 885 (3.730)coding (595/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC........................  <  NC_014034/222054‑221956
....................................................................................................ACGGACCCGACCGATCCCACGGA  <  NC_014034/222062‑222040
                                                                                                   |                       
GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGA                        >  1:2992554/1‑101 (MQ=1)
GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGA                        >  1:3140330/1‑101 (MQ=1)
GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGA                        <  1:4575082/101‑1 (MQ=1)
 ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC                       >  1:511233/1‑101 (MQ=1)
    GATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATACGACCGATCCCACGGACCCGACCGATCCGACGGA                    >  2:3019721/1‑101 (MQ=0)
         gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGc               >  1:586132/2‑100 (MQ=12)
         gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA               >  1:125622/2‑101 (MQ=12)
           CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACC             >  2:4485895/1‑101 (MQ=9)
            GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG            <  2:2874051/101‑1 (MQ=0)
             gacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA           >  2:284395/4‑101 (MQ=0)
              acCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGAc          >  1:533978/3‑100 (MQ=0)
                 CGACCCATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC       <  1:1060310/101‑1 (MQ=0)
                  GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGACCCGACGGACCCGACCGATCCCA      >  1:2889614/1‑101 (MQ=0)
                   cCCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC     <  2:64008/100‑1 (MQ=0)
                     CGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGCCGGACCCGACCGATCCCACG  >  1:506428/1‑100 (MQ=0)
                      GATCCCACGGCCCCGACCGATCCCACGGACCCTACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGA  <  2:3990485/101‑1 (MQ=0)
                      GATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCCATCCCACGcc  >  1:3682748/1‑99 (MQ=0)
                                                                                                   |                       
GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC........................  <  NC_014034/222054‑221956
....................................................................................................ACGGACCCGACCGATCCCACGGA  <  NC_014034/222062‑222040

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 40 ≤  ATCG