New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221956 =287 (1.440)6 (0.030) 3/168 34.1 0.02 coding (701/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222128 204 (0.860)coding (529/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

GACCCGACCGATCCCACGGACCCGACCGATCC.............................................................................  <  NC_014034/221987‑221956
................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCG  <  NC_014034/222128‑222068
                                ||||||||||||||||                                                             
GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGGTCCCACGGATCCGACCGATCACACGGACACGACGGA          >  2:3319559/1‑101 (MQ=255)
 atCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGAC         >  1:2248421/3‑101 (MQ=12)
   ccccCCGATCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC       <  1:925261/97‑1 (MQ=0)
    CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc      <  1:14901/101‑2 (MQ=14)
    CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAACCCACGGACCCGACGGAtgcc      >  2:3362098/1‑97 (MQ=0)
        CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGCACCCCACgg  >  1:1771018/1‑99 (MQ=0)
                                ||||||||||||||||                                                             
GACCCGACCGATCCCACGGACCCGACCGATCC.............................................................................  <  NC_014034/221987‑221956
................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCG  <  NC_014034/222128‑222068

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 40 ≤  ATCG