New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221962 =494 (2.240)79 (0.360) 28/186 19.0 0.11 coding (695/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222062 743 (3.130)coding (595/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC........................................................................................................  <  NC_014034/222061‑221962
...........................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACC  <  NC_014034/222062‑221966
                                                                                                    |||||||                                                                                                 
CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACG                                                                                                         >  1:3606848/1‑101 (MQ=14)
 GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGCTCCGACGG                                                                                                        >  2:583566/1‑101 (MQ=11)
 GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGACCCCACGGATCCGACGG                                                                                                        >  1:2051975/1‑101 (MQ=11)
  GACCCGCCCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGA                                                                                                       <  1:3244658/101‑1 (MQ=0)
     CCGACCGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                                                                    <  1:2592887/101‑1 (MQ=12)
      ctACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                                                                                   <  2:106042/99‑1 (MQ=9)
      CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                                                                                   <  1:14901/101‑1 (MQ=14)
       GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCA                                                                                                  <  2:3801296/101‑1 (MQ=0)
       GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCA                                                                                                  >  2:558880/1‑101 (MQ=11)
        ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                                                                 >  1:3490687/1‑101 (MQ=0)
         aCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACG                                                                                                <  2:1544025/100‑1 (MQ=2)
         CCGATCCCCCGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACG                                                                                                <  2:1994833/101‑1 (MQ=2)
         CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGCCGGACCCCACG                                                                                                >  1:2569075/1‑101 (MQ=0)
         CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACG                                                                                                >  2:120748/1‑101 (MQ=0)
          CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                                                               >  1:3337467/1‑101 (MQ=0)
          CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                                                               >  2:897926/1‑101 (MQ=0)
           GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                                                              >  1:9727/1‑101 (MQ=0)
           GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                                                              >  2:2815361/1‑101 (MQ=0)
           GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                                                              >  2:2399916/1‑101 (MQ=0)
            ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                                                             >  2:1226234/1‑101 (MQ=0)
            ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                                                             <  1:996650/101‑1 (MQ=0)
            ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                                                             <  2:1094180/101‑1 (MQ=0)
            ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGCAC                                                                                             >  1:799693/1‑101 (MQ=0)
             TCCGACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACC                                                                                            >  2:3950916/1‑101 (MQ=0)
              CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCCCGGACCC                                                                                           >  1:173160/1‑101 (MQ=0)
              CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                                                           >  2:2895397/1‑101 (MQ=0)
              CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                                                           <  1:2373036/101‑1 (MQ=0)
              CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                                                           <  1:4067504/101‑1 (MQ=0)
              CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                                                                                           >  1:1416047/1‑101 (MQ=0)
                CACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCCCGGACCCGA                                                                                         >  2:1176909/1‑101 (MQ=0)
                CACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGc                                                                                         >  2:1799696/1‑100 (MQ=0)
                 ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGAC                                                                                        >  1:2159745/1‑101 (MQ=0)
                  CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                                                                       <  1:3425158/101‑1 (MQ=0)
                  CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                                                                       <  2:2026486/101‑1 (MQ=0)
                   GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                                                      <  1:2915296/101‑1 (MQ=0)
                   GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                                                                      >  1:4562912/1‑101 (MQ=0)
                    GATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGA                                                                                     >  2:2572114/1‑101 (MQ=0)
                     ATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGAc                                                                                    >  1:2242472/1‑100 (MQ=0)
                      cCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCCCGGACCCGACCGATC                                                                                   >  1:335744/2‑101 (MQ=0)
                      TCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGCCCGAcc                                                                                   >  1:1257604/1‑99 (MQ=0)
                      TCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATC                                                                                   <  1:3928340/101‑1 (MQ=0)
                        ctACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCC                                                                                 <  2:2231428/99‑1 (MQ=0)
                          cCCGATCCCACGGCCCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCAC                                                                               <  2:3896356/100‑1 (MQ=0)
                            CGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGCTCCCACGG                                                                             >  2:3583621/1‑101 (MQ=0)
                             GATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCCCGGc                                                                            >  1:615824/1‑100 (MQ=0)
                             GATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACAGATCCCACGGA                                                                            >  2:3732944/1‑101 (MQ=0)
                             GATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGCCCGATCCCACGGc                                                                            >  1:2623748/1‑100 (MQ=0)
                             GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAGCCGACGGACCCCACGGACCCGACCGATCCCACGGA                                                                            >  2:2251690/1‑101 (MQ=12)
                              ATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACAGAg                                                                           >  2:4247771/1‑100 (MQ=0)
                               TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAcc                                                                          <  1:836532/101‑3 (MQ=18)
                               TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCGATCCCACGGccc                                                                          >  1:2495834/1‑98 (MQ=2)
                                 CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGccccg                                                                        >  1:3532571/1‑96 (MQ=9)
                                   cCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                      <  2:3812784/100‑1 (MQ=12)
                                   ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                      <  1:3642246/101‑1 (MQ=12)
                                   ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                                                                      <  1:2410071/101‑1 (MQ=12)
                                    CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                                                                     <  1:527776/101‑1 (MQ=12)
                                    CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                                                                     <  1:3762293/101‑1 (MQ=12)
                                    CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC                                                                     >  2:2252497/1‑101 (MQ=12)
                                     GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAGCCGACCG                                                                    >  2:4288358/1‑101 (MQ=0)
                                     GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                                    <  2:9723/101‑1 (MQ=12)
                                     GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                                    <  2:4090929/101‑1 (MQ=12)
                                     GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                                    >  1:2339047/1‑101 (MQ=12)
                                     GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG                                                                    <  2:1508493/101‑1 (MQ=12)
                                       ACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAT                                                                  >  2:3510165/1‑101 (MQ=9)
                                       ACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAT                                                                  <  2:1682995/101‑1 (MQ=9)
                                        CCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATC                                                                 >  2:661546/1‑101 (MQ=2)
                                        CCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATC                                                                 >  1:1868392/1‑101 (MQ=2)
                                         CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                                >  2:2504784/1‑101 (MQ=0)
                                                     ACGGACCCGACCGATCCCACGGACCCCACCGACCCCACGGACCCGACGGACCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC                                                    <  1:3842793/101‑1 (MQ=255)
                                                                  ATCCCACGGACCCCACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAc                                       <  2:2338885/101‑2 (MQ=0)
                                                                           atCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCTCCGACCGAT                              >  1:3906785/3‑101 (MQ=0)
                                                                             CCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                            >  1:1553295/1‑101 (MQ=9)
                                                                             CCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                            <  1:3672576/101‑1 (MQ=12)
                                                                              CGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC                           <  2:395109/101‑1 (MQ=12)
                                                                                ACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                         <  1:377496/101‑1 (MQ=12)
                                                                                ACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                         <  2:2583221/101‑1 (MQ=12)
                                                                                ACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                         <  2:2438073/101‑1 (MQ=12)
                                                                                ACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                         <  1:2815577/101‑1 (MQ=12)
                                                                                   GATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                      <  1:2895613/101‑1 (MQ=12)
                                                                                    ATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt                     <  1:1705289/101‑2 (MQ=9)
                                                                                             atCCGACGGACCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGAc            >  1:4129024/3‑100 (MQ=0)
                                                                                              tCCGACGGCCCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATC           <  1:1576024/100‑1 (MQ=255)
                                                                                                  ACGGACCCCACGGACCCGACCGATCCCACGGGCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC       <  1:2216112/101‑1 (MQ=0)
                                                                                                  ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGCTCCCAC       >  1:2867469/1‑101 (MQ=0)
                                                                                                  ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCAC       >  1:3639332/1‑101 (MQ=0)
                                                                                                  ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCAC       >  1:1435459/1‑101 (MQ=0)
                                                                                                       CCCCACCGACCCGACCGAACCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc  <  2:4582381/101‑3 (MQ=0)
                                                                                                    |||||||                                                                                                 
CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC........................................................................................................  <  NC_014034/222061‑221962
...........................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACC  <  NC_014034/222062‑221966

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG