New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 222019 =1124 (4.880)64 (0.280) 10/194 30.3 0.09 coding (638/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222126 233 (0.980)coding (531/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC....................................................................................................  <  NC_014034/222120‑222019
...................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCC  <  NC_014034/222126‑222027
                                                                                                                                                                                                          
  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCC                                                                                                     <  1:2266865/101‑1 (MQ=1)
  CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCC                                                                                                     >  2:1525304/1‑101 (MQ=1)
   GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCA                                                                                                    >  2:1239485/1‑101 (MQ=1)
   GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCA                                                                                                    <  1:216157/101‑1 (MQ=1)
    ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCAC                                                                                                   <  2:3287235/101‑1 (MQ=1)
      CGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGG                                                                                                 >  2:2362492/1‑101 (MQ=1)
       cATCCGACGGATCCGACCGACCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGA                                                                                                <  1:241886/100‑1 (MQ=0)
       GATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCAAGGA                                                                                                >  1:328885/1‑101 (MQ=0)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAt                                                                                               <  1:3121374/101‑2 (MQ=11)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAt                                                                                               <  2:3509535/101‑2 (MQ=11)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAt                                                                                               <  1:1967427/101‑2 (MQ=11)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAC                                                                                               >  2:85152/1‑101 (MQ=1)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCCACGGAC                                                                                               >  1:1673691/1‑101 (MQ=0)
         TCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGcatc                                                                                              >  1:4538663/1‑97 (MQ=2)
          CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                             <  1:2437902/101‑1 (MQ=17)
           CCACGGATCCGACCGATCCCACGGGCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCG                                                                                            <  2:2463002/101‑1 (MQ=12)
           CCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACAGATCCG                                                                                            >  2:1225581/1‑101 (MQ=12)
            CACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCAACGGACCCCACGGATCCGA                                                                                           >  2:3645592/1‑101 (MQ=12)
            CACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCACACGGACCCCACGGATCCGA                                                                                           >  2:2755818/1‑101 (MQ=12)
             cCGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGAC                                                                                          <  1:2207289/100‑1 (MQ=17)
             ACGGATCCGACCGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGAC                                                                                          <  1:890763/101‑1 (MQ=12)
             ACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGAC                                                                                          <  1:1560786/101‑1 (MQ=17)
              CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         <  2:2587096/101‑1 (MQ=17)
              CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         <  2:1417577/101‑1 (MQ=17)
              CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         <  1:682716/101‑1 (MQ=17)
              CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         <  1:1124608/101‑1 (MQ=17)
              CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         >  1:354585/1‑101 (MQ=17)
                 ATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGAc                                                                                      >  2:4651814/1‑100 (MQ=17)
                   CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCCACGGATCCGACCGATCC                                                                                    >  1:4666147/1‑101 (MQ=12)
                   CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCC                                                                                    >  2:4319772/1‑101 (MQ=17)
                    CGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCC                                                                                   <  1:3931124/101‑1 (MQ=17)
                    CGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGACCCGACCGACCCC                                                                                   >  1:3662204/1‑101 (MQ=0)
                     GACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCA                                                                                  <  1:1935757/101‑1 (MQ=18)
                     GACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCA                                                                                  <  2:1730526/101‑1 (MQ=17)
                     GACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACAGATCCCA                                                                                  >  2:4160421/1‑101 (MQ=12)
                     GACCAATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCA                                                                                  <  1:3565501/101‑1 (MQ=12)
                      ACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGCCCGATCCCAC                                                                                 >  2:1084104/1‑101 (MQ=12)
                      ACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCAC                                                                                 >  1:1731346/1‑101 (MQ=17)
                       CCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACG                                                                                <  2:115367/101‑1 (MQ=18)
                       CCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACG                                                                                <  1:15768/101‑1 (MQ=18)
                       CCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACG                                                                                <  1:521701/101‑1 (MQ=17)
                        CGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGG                                                                               >  1:706315/1‑101 (MQ=17)
                        CGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGG                                                                               <  2:4236490/101‑1 (MQ=18)
                         gacCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGA                                                                              <  2:580725/98‑1 (MQ=16)
                          ATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGACCCCACCGATCCCACGGAc                                                                             >  1:1994970/1‑100 (MQ=2)
                           TCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGCCCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGAac                                                                            <  1:1947368/101‑3 (MQ=12)
                           TCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGAcc                                                                            >  2:2896088/1‑99 (MQ=17)
                            CCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCC                                                                           >  2:3026582/1‑101 (MQ=17)
                            CCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCC                                                                           <  2:3180602/101‑1 (MQ=18)
                             CCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCG                                                                          <  2:3157847/101‑1 (MQ=17)
                             CCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCG                                                                          <  1:2406381/101‑1 (MQ=18)
                              CACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGc                                                                         >  1:4261977/1‑100 (MQ=17)
                                 GGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                      >  2:1538534/1‑101 (MQ=17)
                                 GGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                      <  2:4577171/101‑1 (MQ=18)
                                     CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCC                                                                  >  1:2206126/1‑101 (MQ=17)
                                      CGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCC                                                                 >  2:2961088/1‑101 (MQ=18)
                                       GACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCc                                                                >  1:2025451/1‑100 (MQ=18)
                                       GACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA                                                                >  1:2614400/1‑101 (MQ=21)
                                        ACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC                                                               <  1:4058130/101‑1 (MQ=25)
                                         CGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG                                                              >  1:1972932/1‑101 (MQ=25)
                                          GGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGG                                                             >  2:527728/1‑101 (MQ=25)
                                           GACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA                                                            >  1:480653/1‑101 (MQ=25)
                                            ACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAt                                                           <  2:4197387/101‑2 (MQ=25)
                                            ACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAt                                                           <  1:1538640/101‑2 (MQ=37)
                                                                                                                                                                                                          
CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC....................................................................................................  <  NC_014034/222120‑222019
...................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCC  <  NC_014034/222126‑222027

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG