New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2486558	204 (0.910)	47 (0.210)	3/188	36.3	0.31	intergenic (‑186/+8)	RCAP_rcc02312/soxG	hypothetical protein/sarcosine oxidase subunit gamma
	?	NC_014034	= 2600943	1 (0.000)					intergenic (+5/‑136)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

CCGGGCAAGTCACCCCCGGGATATTCATGGCAAGATGAAGGAGGCGTGTTTCATCTTGCCATAAATATCCCGGGGGGAGTCCGCAGGACGGGGGGCAGCGCCCCCC....................................................................................................  >  NC_014034/2486453‑2486558 ....................................................................................................CCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGGCGGTGG  <  NC_014034/2600943‑2600844                                                                                                                                                                                                                                                                                                agcgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGG                           >  2:1037302/9‑101 (MQ=1)                                                                                  gcgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGA                          >  2:3017068/8‑101 (MQ=1)                                                                                   cgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                         >  1:1252776/7‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  2:4535032/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  2:4293671/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        <  1:2438934/96‑1 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  1:4144091/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  1:3775886/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  1:3019414/6‑101 (MQ=1)                                                                                      agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      <  1:2230623/98‑1 (MQ=1)                                                                                      agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      <  2:3696819/98‑1 (MQ=1)                                                                                      agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      <  2:3014309/98‑1 (MQ=1)                                                                                      agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      <  2:2951417/98‑1 (MQ=1)                                                                                       gcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAG                     >  1:2051700/3‑101 (MQ=1)                                                                                       gcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAG                     <  1:341399/99‑1 (MQ=1)                                                                                        cCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                    >  2:932189/2‑101 (MQ=1)                                                                                        cCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                    <  1:1488796/100‑1 (MQ=1)                                                                                         CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                   >  1:1683785/1‑101 (MQ=1)                                                                                         CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                   >  1:4304533/1‑101 (MQ=1)                                                                                         CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCATTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                   >  1:243597/1‑101 (MQ=1)                                                                                          GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                  >  2:3955511/1‑101 (MQ=1)                                                                                          GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                  >  1:225379/1‑101 (MQ=1)                                                                                          GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                  >  1:2489607/1‑101 (MQ=1)                                                                                           GGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCG                 <  2:3914359/101‑1 (MQ=1)                                                                                            GGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGC                >  2:4565983/1‑101 (MQ=1)                                                                                            GGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGC                >  2:3789753/1‑101 (MQ=1)                                                                                            GGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGC                >  1:3825536/1‑101 (MQ=1)                                                                                             GGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCC               >  1:3291003/1‑101 (MQ=1)                                                                                             GGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCC               <  1:2906981/101‑1 (MQ=1)                                                                                             GGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCC               <  2:3241434/101‑1 (MQ=1)                                                                                              GGCAGGCCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC              <  1:2723408/101‑1 (MQ=0)                                                                                              GGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC              <  1:3017297/101‑1 (MQ=1)                                                                                              GGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC              <  2:1999677/101‑1 (MQ=1)                                                                                              GGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGGCCTCGGACGGGAAGAAGCGCGCCC              >  1:276550/1‑101 (MQ=1)                                                                                               GCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCG             <  2:1664890/101‑1 (MQ=1)                                                                                               GCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCG             >  1:4640298/1‑101 (MQ=1)                                                                                                CAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGC            >  2:2422768/1‑101 (MQ=1)                                                                                                CAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGC            >  2:4500681/1‑101 (MQ=1)                                                                                                  ggGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          <  2:4307667/99‑1 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          >  2:1719618/3‑101 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          <  2:1509958/99‑1 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          <  2:597646/99‑1 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          >  1:3146114/3‑101 (MQ=1)                                                                                                   aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG         <  2:3858440/100‑1 (MQ=1)                                                                                                    GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG        >  1:2416039/1‑101 (MQ=1)                                                                                                    GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG        >  1:3884770/1‑101 (MQ=1)                                                                                                    GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG        <  1:1691355/101‑1 (MQ=1)                                                                                                                                                                                                                CCGGGCAAGTCACCCCCGGGATATTCATGGCAAGATGAAGGAGGCGTGTTTCATCTTGCCATAAATATCCCGGGGGGAGTCCGCAGGACGGGGGGCAGCGCCCCCC....................................................................................................  >  NC_014034/2486453‑2486558 ....................................................................................................CCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGGCGGTGG  <  NC_014034/2600943‑2600844 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 40 ≤  ATCG