New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2600949	0 (0.000)	79 (0.350)	14/190	27.0	0.42	intergenic (+11/‑130)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
	?	NC_014034	3609076 =	217 (0.910)					intergenic (+15/‑156)	clpB/dinB	chaperone ClpB/DNA polymerase IV
Rejected: Position hash score below cutoff.

CACCGCCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGG.....................................  >  NC_014034/2600845‑2600949 ....................................................................................................GGGGGCTCTGCCCCC..GCTTCGCTCCCCCCGGGATATTTGG  >  NC_014034/3609076‑3609110                                                                                                                                                     CCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGC                                      >  1:1691355/1‑101 (MQ=1)      CCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGC                                      <  1:3884770/101‑1 (MQ=1)      CCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGC                                      <  1:2416039/101‑1 (MQ=1)       CGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCT                                     >  2:3858440/1‑101 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCcc                                    >  2:4307667/1‑99 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTC                                    <  1:3146114/101‑1 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTC                                    >  2:597646/1‑101 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTC                                    >  2:1509958/1‑101 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTC                                    <  2:1719618/101‑1 (MQ=1)          GCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTG                                  <  2:2422768/101‑1 (MQ=1)          GCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTG                                  <  2:4500681/101‑1 (MQ=1)           CGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGC                                 <  1:4640298/101‑1 (MQ=1)           CGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGC                                 >  2:1664890/1‑101 (MQ=1)            GGGCGCGCTTCTTCCCGTCCGAGGCCCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCC                                <  1:276550/101‑1 (MQ=1)            GGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGCCTGCC                                >  1:2723408/1‑101 (MQ=0)            GGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCC                                >  1:3017297/1‑101 (MQ=1)            GGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCC                                >  2:1999677/1‑101 (MQ=1)             GGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCC                               <  1:3291003/101‑1 (MQ=1)             GGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCC                               >  1:2906981/1‑101 (MQ=1)             GGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCC                               >  2:3241434/1‑101 (MQ=1)              GCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCC                              <  2:4565983/101‑1 (MQ=1)              GCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCC                              <  2:3789753/101‑1 (MQ=1)              GCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCC                              <  1:3825536/101‑1 (MQ=1)               CGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCC                             >  2:3914359/1‑101 (MQ=1)                GCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCc                            <  1:2489607/101‑2 (MQ=1)                GCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCc                            <  1:225379/101‑2 (MQ=1)                GCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCc                            <  2:3955511/101‑2 (MQ=1)                 CGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAATGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcg                           <  1:243597/101‑3 (MQ=1)                 CGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcg                           <  1:1683785/101‑3 (MQ=1)                 CGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcg                           <  1:4304533/101‑3 (MQ=1)                  GCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcgg                          >  1:1488796/1‑98 (MQ=1)                  GCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcgg                          <  2:932189/101‑4 (MQ=1)                   CTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggc                         >  1:341399/1‑97 (MQ=1)                   CTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggc                         <  1:2051700/101‑5 (MQ=1)                    TTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggct                        >  2:3696819/1‑96 (MQ=1)                    TTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggct                        >  1:2230623/1‑96 (MQ=1)                    TTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggct                        >  2:2951417/1‑96 (MQ=1)                    TTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggct                        >  2:3014309/1‑96 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      >  1:2438934/1‑94 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  2:4535032/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  1:3019414/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  1:3775886/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  1:4144091/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  2:4293671/101‑8 (MQ=1)                       TTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttcg                     <  1:1252776/101‑9 (MQ=1)                       TTCCCGTCCGAGGACCGCACGCAGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttcg                     <  1:1291870/101‑9 (MQ=1)                        TCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttcgc                    <  2:3017068/101‑10 (MQ=1)                         CCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCT                   <  2:1037302/101‑1 (MQ=1)                          CCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTC                  <  2:1320376/101‑1 (MQ=1)                           CGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCC                 >  2:2926277/1‑101 (MQ=1)                             TCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCC               >  2:731458/1‑101 (MQ=1)                               CGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCC             <  1:3288260/101‑1 (MQ=1)                               CGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCC             <  1:805666/101‑1 (MQ=1)                               CGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCC             <  2:519133/101‑1 (MQ=1)                               CGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCC             <  2:2670972/101‑1 (MQ=1)                               CGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCC             >  2:803661/1‑101 (MQ=1)                                GAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCG            >  1:1006309/1‑101 (MQ=1)                                GAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCG            >  1:4206316/1‑101 (MQ=1)                                 AGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGG           >  2:2204985/1‑101 (MQ=1)                                  GGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGG          <  2:3782927/101‑1 (MQ=1)                                   GACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGA         >  1:2297654/1‑101 (MQ=1)                                   GACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGA         >  1:2702792/1‑101 (MQ=1)                                   GACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGA         >  1:449594/1‑101 (MQ=1)                                    ACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGAT        <  1:449462/101‑1 (MQ=1)                                    ACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGAT        <  2:1601812/101‑1 (MQ=1)                                     CCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATA       <  1:1812068/101‑1 (MQ=1)                                      CGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATAT      >  1:738119/1‑101 (MQ=1)                                       GCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATT     >  1:1177667/1‑101 (MQ=1)                                       GCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATT     <  2:326536/101‑1 (MQ=1)                                       GCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATT     >  1:3898228/1‑101 (MQ=1)                                       GCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATT     >  2:4555538/1‑101 (MQ=1)                                       GCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATT     <  1:1872835/101‑1 (MQ=1)                                        CACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTT    >  2:4201380/1‑101 (MQ=1)                                        CACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTT    <  2:4491076/101‑1 (MQ=1)                                        CACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTT    >  2:1009982/1‑101 (MQ=1)                                         ACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTG   <  1:4307956/101‑1 (MQ=1)                                         ACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTG   <  2:3304717/101‑1 (MQ=1)                                          CGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTGc  <  1:2630602/101‑2 (MQ=1)                                          CGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTGc  <  2:4331757/101‑2 (MQ=1)                                                                                                                                                CACCGCCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGG.....................................  >  NC_014034/2600845‑2600949 ....................................................................................................GGGGGCTCTGCCCCC..GCTTCGCTCCCCCCGGGATATTTGG  >  NC_014034/3609076‑3609110 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG