New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2600952 =	0 (0.000)	53 (0.230)	12/192	28.6	0.34	intergenic (+14/‑127)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
	?	NC_014034	3003969 =	205 (0.860)					intergenic (+15/+161)	gfo/lrp	glucose‑‑fructose oxidoreductase/leucine‑responsive regulatory protein
Rejected: Position hash score below cutoff.

GTCTGATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGG....................................................................................................  <  NC_014034/2601055‑2600952 ....................................................................................................GGGGGCGCTGCCCCCCTCTTGGCCTGACGGCCAATTCACCCCCCGGGATATTTGGACCAAGGTGAAAGCAGATCCCGGTTTGCCTTTCACCTTGGCGCAAATAT  >  NC_014034/3003969‑3004068                                                                                                                                                                                                                  GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     <  2:4292472/101‑1 (MQ=1)     GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     >  1:3121574/1‑101 (MQ=1)     GATTAGCCGCTGCGCCGCAGCCAAACAAGAAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     <  1:883967/101‑1 (MQ=1)      ATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGGGGg                                                                                                    >  2:779262/1‑100 (MQ=11)      ATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGg                                                                                                    >  1:1603947/1‑100 (MQ=11)      ATTACCCGCGGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGC                                                                                                    <  1:4320237/101‑1 (MQ=0)        TAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGGGGGGGGGGC                                                                                                  >  1:458279/1‑101 (MQ=2)         gtCCGCTGCGCCGCAGCCAACCAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCT                                                                                                 <  1:4572857/99‑1 (MQ=1)         AGCCGCTGCGCGGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCT                                                                                                 <  1:767549/101‑1 (MQ=1)         AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGgggg                                                                                                 >  2:3603484/1‑97 (MQ=11)         AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCg                                                                                                 >  1:4646108/1‑100 (MQ=11)          GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCcg                                                                                                >  1:18024/1‑99 (MQ=11)          GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCcg                                                                                                <  2:1928509/101‑3 (MQ=31)          GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG                                                                                                <  1:3769159/101‑1 (MQ=1)          GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG                                                                                                <  1:68442/101‑1 (MQ=1)             GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGGAGGGGGGGCGGCCC                                                                                             >  2:2097712/1‑101 (MQ=0)             GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGgggcgccc                                                                                             >  1:2586551/1‑93 (MQ=2)             GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCTGCCC                                                                                             >  1:3477147/1‑101 (MQ=1)             GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                             >  2:4132522/1‑101 (MQ=1)             GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCACGGGGCGCTGCCC                                                                                             <  1:2531011/101‑1 (MQ=1)              CTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGCCCC                                                                                            >  1:4511998/1‑101 (MQ=32)              CTGCGCCGCACCAAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCC                                                                                            <  2:3581235/101‑1 (MQ=0)               gGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCC                                                                                           <  1:3470437/100‑1 (MQ=1)               TGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCGGCCCCC                                                                                           >  2:1997911/1‑101 (MQ=1)               TGCGCCGCAGCCAAACAAGCAAGCCGCTGCACGTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGCCCCC                                                                                           >  2:1360401/1‑101 (MQ=17)                GCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCCGCCCCCC                                                                                          >  2:2125899/1‑101 (MQ=14)                GCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCt                                                                                          <  2:3669882/101‑2 (MQ=1)                 CGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGGGGGGCTGCCCCCCc                                                                                         >  1:4264293/1‑100 (MQ=0)                 CGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCTGCCCCCCc                                                                                         >  1:1211977/1‑100 (MQ=1)                  GCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtct                                                                                        <  1:4516354/101‑4 (MQ=1)                  GCCGCAGCAAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtct                                                                                        <  2:1193394/101‑4 (MQ=1)                    CGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGGGGGGCTGCCCCCCcttg                                                                                      >  1:1266211/1‑97 (MQ=2)                    CGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTG                                                                                     <  2:3121330/101‑1 (MQ=11)                     GCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGG                                                                                    <  1:3441205/101‑1 (MQ=11)                       cGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCC                                                                                  <  2:725323/100‑1 (MQ=11)                       AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGGGGCGCTGCCCCCC.CTTGGCC                                                                                  >  2:4368986/1‑101 (MQ=0)                       AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCC                                                                                  >  1:490912/1‑101 (MQ=11)                        cCCAAACAAGAAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCT                                                                                 <  2:1995570/100‑1 (MQ=9)                        GCCAAACAAGCAAGCCGCTGCACTTGGCGCTCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCT                                                                                 <  1:1952299/101‑1 (MQ=9)                        GCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCT                                                                                 <  2:908266/101‑1 (MQ=14)                        GCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCT                                                                                 <  1:102169/101‑1 (MQ=14)                         CCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTt                                                                                >  2:2297492/1‑100 (MQ=11)                         CCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCG.CCCCCTCTTGGCCTt                                                                                >  2:3780221/1‑100 (MQ=17)                          CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTtt                                                                               <  2:2779339/101‑3 (MQ=11)                          CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTtt                                                                               <  2:1141777/101‑3 (MQ=11)                          CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTtt                                                                               <  1:691114/101‑3 (MQ=11)                          CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTtt                                                                               <  2:658358/101‑3 (MQ=11)                          CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTtt                                                                               <  1:2086094/101‑3 (MQ=11)                          CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGCCCCCC.CTTGGCCctt                                                                               >  1:3565200/1‑98 (MQ=9)                            AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttgg                                                                             <  2:2419157/101‑5 (MQ=2)                            AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttgg                                                                             <  1:994692/101‑5 (MQ=2)                            AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttgg                                                                             <  2:4245278/101‑5 (MQ=2)                             ACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttggc                                                                            <  1:275509/101‑6 (MQ=0)                                                                                                                                                                                                              GTCTGATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGG....................................................................................................  <  NC_014034/2601055‑2600952 ....................................................................................................GGGGGCGCTGCCCCCCTCTTGGCCTGACGGCCAATTCACCCCCCGGGATATTTGGACCAAGGTGAAAGCAGATCCCGGTTTGCCTTTCACCTTGGCGCAAATAT  >  NC_014034/3003969‑3004068 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG