New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2600952 =	0 (0.000)	51 (0.230)	12/190	28.4	0.47	intergenic (+14/‑127)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
	?	NC_014034	= 3254805	113 (0.480)					intergenic (+130/‑53)	glpX/recJ	fructose‑1,6‑bisphosphatase/single‑stranded‑DNA‑specific exonuclease RecJ
Rejected: Position hash score below cutoff.

TGTCTGATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGG....................................................................................................  <  NC_014034/2601056‑2600952 ....................................................................................................AGGGGGCGCCGCCCCCTCTTTGCCTGTCGGCAAATTCCCCCCCGGGATATTTCGGCCAAGGTGAAACGGCCCCGTTTTCCTTGGCAAAATACGCGCAGGGGGTGC  <  NC_014034/3254805‑3254706                                                                                                                                                                                                                    GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     <  2:4292472/101‑1 (MQ=1)      GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     >  1:3121574/1‑101 (MQ=1)      GATTAGCCGCTGCGCCGCAGCCAAACAAGAAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     <  1:883967/101‑1 (MQ=1)       ATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGGGGg                                                                                                    >  2:779262/1‑100 (MQ=11)       ATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGg                                                                                                    >  1:1603947/1‑100 (MQ=11)       ATTACCCGCGGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGC                                                                                                    <  1:4320237/101‑1 (MQ=0)         TAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGGGGGGGGGGC                                                                                                  >  1:458279/1‑101 (MQ=2)          gtCCGCTGCGCCGCAGCCAACCAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCt                                                                                                 <  1:4572857/99‑2 (MQ=1)          AGCCGCTGCGCGGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCt                                                                                                 <  1:767549/101‑2 (MQ=1)          AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGgggg                                                                                                 >  2:3603484/1‑97 (MQ=11)          AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCg                                                                                                 >  1:4646108/1‑100 (MQ=11)           GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCCG                                                                                                >  1:18024/1‑101 (MQ=11)           GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCtg                                                                                                <  1:68442/101‑3 (MQ=1)           GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCtg                                                                                                <  1:3769159/101‑3 (MQ=1)           GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCG                                                                                                <  2:1928509/101‑1 (MQ=31)              GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGGAGGGGGGGCGGCCC                                                                                             >  2:2097712/1‑101 (MQ=0)              GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGGCGCCC                                                                                             >  1:2586551/1‑101 (MQ=2)              GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCTGCCC                                                                                             >  1:3477147/1‑101 (MQ=1)              GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                             >  2:4132522/1‑101 (MQ=1)              GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCACGGGGCGCTGCCC                                                                                             <  1:2531011/101‑1 (MQ=1)               CTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGCCCC                                                                                            >  1:4511998/1‑101 (MQ=32)               CTGCGCCGCACCAAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCC                                                                                            <  2:3581235/101‑1 (MQ=0)                gGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCC                                                                                           <  1:3470437/100‑1 (MQ=1)                TGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCGGCCCCC                                                                                           >  2:1997911/1‑101 (MQ=1)                TGCGCCGCAGCCAAACAAGCAAGCCGCTGCACGTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGCCCCC                                                                                           >  2:1360401/1‑101 (MQ=17)                 GCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCCGCCCCCc                                                                                          >  2:2125899/1‑100 (MQ=14)                 GCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCT                                                                                          <  2:3669882/101‑1 (MQ=1)                  CGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGGGGGGCTGCCCCCcc                                                                                         >  1:4264293/1‑99 (MQ=0)                  CGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCTGCCCCCcc                                                                                         >  1:1211977/1‑99 (MQ=1)                   GCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCT                                                                                        <  1:4516354/101‑1 (MQ=1)                   GCCGCAGCAAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCT                                                                                        <  2:1193394/101‑1 (MQ=1)                     CGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTg                                                                                      <  2:3121330/101‑2 (MQ=11)                      GCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTgg                                                                                     <  1:3441205/101‑3 (MQ=11)                        cGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCC                                                                                   <  2:725323/100‑1 (MQ=11)                        AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCC                                                                                   >  1:490912/1‑101 (MQ=11)                         cCCAAACAAGAAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCT                                                                                  <  2:1995570/100‑1 (MQ=9)                         GCCAAACAAGCAAGCCGCTGCACTTGGCGCTCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCT                                                                                  <  1:1952299/101‑1 (MQ=9)                         GCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCT                                                                                  <  2:908266/101‑1 (MQ=14)                         GCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCT                                                                                  <  1:102169/101‑1 (MQ=14)                          CCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTt                                                                                 >  2:2297492/1‑100 (MQ=11)                          CCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGCCCCCTCTTGGCCTt                                                                                 >  2:3780221/1‑100 (MQ=17)                           CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTtt                                                                                <  2:2779339/101‑3 (MQ=11)                           CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTtt                                                                                <  2:1141777/101‑3 (MQ=11)                           CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTtt                                                                                <  1:691114/101‑3 (MQ=11)                           CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTtt                                                                                <  2:658358/101‑3 (MQ=11)                           CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTtt                                                                                <  1:2086094/101‑3 (MQ=11)                           CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGCCCCCCCTTGGCCctt                                                                                >  1:3565200/1‑98 (MQ=9)                            AAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGGCGCCCCCTCTTGGCCTttg                                                                               >  1:4560098/1‑98 (MQ=255)                             AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTttgg                                                                              <  2:2419157/101‑5 (MQ=2)                             AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTttgg                                                                              <  1:994692/101‑5 (MQ=2)                             AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTttgg                                                                              <  2:4245278/101‑5 (MQ=2)                                                                                                                                                                                                               TGTCTGATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGG....................................................................................................  <  NC_014034/2601056‑2600952 ....................................................................................................AGGGGGCGCCGCCCCCTCTTTGCCTGTCGGCAAATTCCCCCCCGGGATATTTCGGCCAAGGTGAAACGGCCCCGTTTTCCTTGGCAAAATACGCGCAGGGGGTGC  <  NC_014034/3254805‑3254706 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG