New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2839039 =261 (1.130)2 (0.010) 2/194 38.2 0.01 coding (278/465 nt) putR proline dehydrogenase transcriptional activator
?NC_014034 2839055 = 256 (1.080)coding (294/465 nt) putR proline dehydrogenase transcriptional activator
Rejected: Position hash score below cutoff.

TTTTCCCCCATGATCTTGCGGTATTCCGCAATGTCATGGCTGCGCACCTTCAGCAGGTAATCAAAGCCGCCCGCGATCATGTAGCATTCCTCGACCTCGGGGA....................................................................................................  <  NC_014034/2839141‑2839039
....................................................................................................GGAATGCTACATGATCGCGGGCGGCTTTGATTACCTGCTGAAGGTGCGCAGCCATGACATTGCGGAATACCGCAAGATCATGGGGGAAAAGCTCTCGGCACTG  >  NC_014034/2839055‑2839154
                                                                                                                                                                                                           
                              ATGTCATGGCTGCGCACCTTCAGCAGGTAATCAAAGCCGCCCGCGATCATGTAGCATTCCTCGACCTCGGGGAATGCTACATGATCGCGGGCGGCTTTGAT                                                                          >  1:3544335/1‑101 (MQ=255)
                                     GGCTGCCCACCTTCAGCAGGTAATCAAAGCCGCCCGCGATCATGTAGCATTCCTCGACCTCGGGGAATGCTACATGATCGCGGGCGGCTTTGATTACCTGC                                                                   <  2:3544077/101‑1 (MQ=255)
                                                                                                                                                                                                           
TTTTCCCCCATGATCTTGCGGTATTCCGCAATGTCATGGCTGCGCACCTTCAGCAGGTAATCAAAGCCGCCCGCGATCATGTAGCATTCCTCGACCTCGGGGA....................................................................................................  <  NC_014034/2839141‑2839039
....................................................................................................GGAATGCTACATGATCGCGGGCGGCTTTGATTACCTGCTGAAGGTGCGCAGCCATGACATTGCGGAATACCGCAAGATCATGGGGGAAAAGCTCTCGGCACTG  >  NC_014034/2839055‑2839154

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 39 ≤  ATCG